3BW1


Conserved Protein Domain Family
LSm3

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cd01730: LSm3 
Click on image for an interactive view with Cn3D
Like-Sm protein 3
The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric ring around the 3'-terminus uridylation tag of the gamma-methyl triphosphate (gamma-m-P3) capped U6 snRNA. LSm2-8 form the core of the snRNP particle that, in turn, assembles with other components onto the pre-mRNA to form the spliceosome which is responsible for the excision of introns and the ligation of exons. LSm1-7 is involved in recognition of the 3' uridylation tag and recruitment of the decapping machinery. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet.
Statistics
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PSSM-Id: 212477
Aligned: 43 rows
Threshold Bit Score: 108.852
Created: 10-May-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Residues within loops 3 and 5 of the SM1 motif bind RNA

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                       # #                                      #       
3BW1_A        10 TPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLnn------eeLSESERRCEMVFIRGDTVTLI 83  baker's yeast
EAK90674       6 EPLDLIRLSLDEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEesksdtqnseKKLKKRRIEMLFLRGDLIILV 85  Cryptosporidium...
EAK81616      25 EPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVdvndesgsetVRVVKRQSEMLFVRGDSVILV 104 Ustilago maydis...
XP_001401285  14 EPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVeeden-eqetLRTIKKQEEMLFVRGDSVVLI 92  Aspergillus nig...
XP_952604      9 EPLDMIRLNLDEVIYLKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVdaddnsknetTKVTKRDNGTIFVRGDSLVLL 88  Theileria annul...
CBZ50482       9 EPLDIVRVSLDDRVTIKCRGDREVMGKLHAYDMHLNMVLGDVEEVATTVttdpltgdeqTKKTTRRLPLIFLRGDAIILV 88  Neospora caninu...
CBK20058     373 QPFDLIRLSLDEEVVIKCRHGREIRGKLLAYDQHLNMVVSNAKETQTIVtvdpetnnevKKNVVRNFEALYLRGDAVILI 452 Blastocystis ho...
XP_002677313   8 EPLDLIRLSLDEQVYIKLKGDRELRGTLHAYDQHLNMVLGNVEETIHEIdidketneqqMKSTTRKIGMLFLRGDGVILV 87  Naegleria grube...
XP_001326296   6 MPQDYIRLSMEKRVKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLdkn----gkfIPVRQNQIDMLFVRGDRIVSI 81  Trichomonas vag...
XP_002771844   9 EPFELVKLSLDERIQVKCRGDRYLRGRLVAYDSHLNMVLSEVEEVIEPPvkeg---vkhRRPIRRDLDTIFVRGDGIILV 85  Perkinsus marin...
Feature 1          
3BW1_A        84 ST 85  baker's yeast
EAK90674      86 KP 87  Cryptosporidium parvum Iowa II
EAK81616     105 SP 106 Ustilago maydis 521
XP_001401285  93 SP 94  Aspergillus niger CBS 513.88
XP_952604     89 SH 90  Theileria annulata strain Ankara
CBZ50482      89 AP 90  Neospora caninum Liverpool
CBK20058     453 SP 454 Blastocystis hominis
XP_002677313  88 VN 89  Naegleria gruberi strain NEG-M
XP_001326296  82 AT 83  Trichomonas vaginalis G3
XP_002771844  86 NP 87  Perkinsus marinus ATCC 50983

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