1IRU


Conserved Protein Domain Family
proteasome_beta_type_4

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cd03760: proteasome_beta_type_4 
Click on image for an interactive view with Cn3D
proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Statistics
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PSSM-Id: 239729
Aligned: 29 rows
Threshold Bit Score: 251.336
Created: 26-Apr-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitebeta subunit
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1       #               # #             #                                             
1IRU_2      7 TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGdgh----s 82  cattle
AAC32074   30 TGTSVVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRYLDELTLNDNMWDdgn----s 105 thale cress
BAA96839   36 TGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEFSDFQEILRYLDELTLSDHMWDdgn----s 111 Japanese rice
NP_492354  16 TGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWLQNVIERQVLLWKRFDqd------ 89  Caenorhabditis ele...
NP_704506   8 TGTSVIAIKYKHGIMIAADRKASYGSYAKFQNVERIFKINNKTVMGFSGELADAQYLHELLTRKNINNLSEKkrke--dm 85  Plasmodium falcipa...
AAO51367   43 TGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYSDFQSITNTLNDLVTDDHCMDdgs----k 118 Dictyostelium disc...
AAX70645    3 SGGSVIGLKYNGGVLLASDTLLSYGSLAKWPNIPRIKIIGPHTAVCATGDYADFQDMTEQLESHVERQRRYInd-----v 77  Trypanosoma brucei
XP_652586  18 GTASVLGIKYEGGVLIAADTLGSYGSMALFKDLERVIKLGKYTIIAGSGEYSDFIELNETLQKKVNGDECCEgke---ng 94  Entamoeba histolyt...
XP_955132   6 TGASIIAMKYNDGVLMMTDTKWSLGRMARYMNVKRLEGVSSNTLFATSGDAADHQYLTRILKHAVHTDLLEHnndpseal 85  Theileria annulata...
EAR86077   73 TGSSVIGIAFNGGVIIASDTSISYGGMSRYNHIQRVHKITDNCAFASSGEFSDFQELSRLIDEMTNQTYLNDdki----n 148 Tetrahymena thermo...
Feature 1                                                                                     
1IRU_2     83 ySPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAd------------------------------------gESFLGYVD 126 cattle
AAC32074  106 lGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKn------------------------------------gKSYLGMVS 149 thale cress
BAA96839  112 lGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGVKkgp--------------------------------kgeEKYLGMVN 159 Japanese rice
NP_492354  90 iGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGVEeeekn----------------------------nketsTPFIGVIT 141 Caenorhabditis ele...
NP_704506  86 yTPQHYHSYVSRVFYVRKNRIDPLFNNIIIAGINsqkydnnddnvllytnknnddeqneyknneeykeihkdDLYIGFVD 165 Plasmodium falcipa...
AAO51367  119 lSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQg------------------------------------gKSFLGKVD 162 Dictyostelium disc...
AAX70645   78 lRPDEIFCYLHRHIYHKRSNFEPCLCSFVVCGCQg------------------------------------gVPFLGGID 121 Trypanosoma brucei
XP_652586  95 yKPSELYSYAQRILYKHRCDQKPLFVTLIVGGVKk------------------------------------dEIFLGQTD 138 Entamoeba histolyt...
XP_955132  86 lNAEMLLNYTSRFLYHRRTKLDPVLVSAVVGGFAn------------------------------------gKSFLGYTD 129 Theileria annulata...
EAR86077  149 yTPRDYGNYISQLQYHHRNKMNPLYLWNVIGGVDn------------------------------------gKPYLAHID 192 Tetrahymena thermo...
Feature 1                   #                                       #  ##                   
1IRU_2    127 MLGVAYEAPSLATGYGAYLAQPLLREVLEKq-pVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTE-KGVEIEGP 202 cattle
AAC32074  150 MIGVSFEDDHVATGFGNHLARPILRDEWHA---DLSFEDGVKLLEKCMRVLLYRDRSAINKLQIAKITE-EGVTVSQP 223 thale cress
BAA96839  160 MIGTHFEENHIATGFGNHMAIPILRTEWRE---DMTFEEAVKLVEKCLLVLLYRDRSSINKFQIAKITT-EGATIYPP 233 Japanese rice
NP_492354 142 QKGCAYQVKHIATGLGAFLLNQAVEDEWRKkgeDLSREEAEAVLRKSLELTLYHDCVADNEFEIGRVDAtEGVVLGKE 219 Caenorhabditis elegans
NP_704506 166 MHGTNFCDDYITTGYARYFALTLLRDHYKD---NMTEEEARILINECLRILYFRDATSSNFIQIVKVTS-KGVEYEEP 239 Plasmodium falciparu...
AAO51367  163 LVGTCYKDDIITTGYGSHIALPLLRKARDEn-pNMNLEQAKQLIQDCLRVLFYRDARSSKKIQISVAGE-EGIEISGP 238 Dictyostelium discoi...
AAX70645  122 SVGTQWRDDCVATGYGAYIAIPLLRKALEKp-gGLSREEAVEVIKNCLRVLFYRECRAINKFQIADATN-DAVEIGKP 197 Trypanosoma brucei
XP_652586 139 MYGTSFTENYVASGIGAHMAMPLLRKEWKD---HMSREEAEHLIERCMKILYLNHCWAGNQYLLGVVDS-EGSDIIGP 212 Entamoeba histolytic...
XP_955132 130 YYGTKYTDDFVVTGLGKYFAIGPLREEHRN---DFTLSEAKELALKCMRVLYLRDCQASLRVQVGYVNK-DGVFIEEP 203 Theileria annulata s...
EAR86077  193 LYGTYIETNHVSTGFGNYLCGPLFEKGWRA---DMSEQEAKQLVNTCFQALFYRDARAHETIQVTVIDK-NGVRIEQP 266 Tetrahymena thermoph...

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