Conserved Protein Domain Family
PBP2_MidA_like

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cd01004: PBP2_MidA_like 
Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold.
This subgroup includes the periplasmic binding component of ABC transporter involved in uptake of mimosine MidA and its similar proteins. This periplasmic binding domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270225
Aligned: 41 rows
Threshold Bit Score: 192.841
Created: 6-Mar-2002
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAG47969      35 SGKLPIATT--IYAPFSYIDEs-GKQVGLSVELAQAAAKELGVELTIDQv-pFTSLIPSLGADrIKIAWLNaSVTEERLK 110 Rhizobium sp. T...
AAK90783      63 KKVVKVATD--LTPPISFQDEa-GKLIGIDADLAAALGVILGVDVQMTNvgaGAAIVPAVLSKrFDMTLSGiNDDVELEK 139 Agrobacterium t...
YP_995523     38 KGTLIMSVNp-TLPPMQFVDQt-GALKGMRVELGEAIAKRLCLTPEYVRi-eFSAMIPGLQAGrWDIINTGiFYTDERAK 114 Verminephrobact...
YP_001209730  23 AETLTMGINy-LAAPYSYQDEs-GNLTGFEIELIQAIGKEAGFDVKIEPi-mFSRTLPGLEKGeFDFVGHVyGTEERSQL 99  Dichelobacter n...
YP_770049     40 PGTLVMSTNp-TLPPLQFIDSt-GDLKGMRIDLGKEIAKRLCLEPEYVRi-eFSAMVPGLQAGrWDMINTGiFFTEERAK 116 Rhizobium legum...
YP_001960982  56 AGKIVMCTEl-GNPPGGFLDEdgVTPKGFNVDVMSAIGPAMGIKTEVVHy-pFASIFAALDTGkCDAVMSNnSKSLARVA 133 Agrobacterium r...
YP_885990     48 ADTLKICAPndGTPPSVYHDEs-GDLVGSEVDLGKALAANLGLKPEFVQs-aFAAVIPTLQAKqCDVIMAQlYIKPEREK 125 Mycobacterium s...
YP_556523     52 AGALTVGMPl-DYEPYNFMGAd-GKAQGLDVDIFNGIAETLGLKPQINRm-gFASIIPAVSGArIQVGMSGiGILPARLK 128 Burkholderia xe...
YP_559528     41 KHGLAFCSDl-SNPPADGTADdgSTPQGAEVDIMKEVGKAMGVPTRIDNy-qFSGIFAALDTGkCDMVMASlGKTPERAQ 118 Burkholderia xe...
YP_001234266  39 SGTLRICSAv-NLPPMEFMNAe-TRPVGLDIDLGDAIASHLGVKPEWINm-pFAGLIPALLAShCDIIMSQlFIKPGRLK 115 Acidiphilium cr...
AAG47969     111 qADFVSWMEDGTIISTLPEnkdky-akrtELCGATVAVQsGTAADFSADqvneeCKAAGlkefKKDIYPsqqDTVQAVIT 189 Rhizobium sp. T...
AAK90783     140 qVDVIDYMYDATTIMTIKGnplsi-ksmeDLCGKKVAVPvGTFQNRLVVaasakCKTTPi---EIISIPkmpDVLQAVRT 215 Agrobacterium t...
YP_995523    115 lMQMLPYEDQAISISTARGnplki-nkpeDLSGKSIGVEiGGFEERKAReldkqLTDKGlkgmTIRTFEnfaMAFQSLRA 193 Verminephrobact...
YP_001209730 100 -YNMIHIHDDGFKFIRLKKsdme--piseNTKVSVISLSpQDEQLQAVK-----KLKYPn--lEIAALDtnfLALKNLFM 169 Dichelobacter n...
YP_770049    117 iMQMIPYEDQAISVSVAPDskknv-aakdDLAGMTIGVEiGGFEETKTRlldkeLRDAGkeglTIQTFDnfaLAFQALRA 195 Rhizobium legum...
YP_001960982 134 kYNFVEYVRERMGLLVPKGnplni-ktyeDLSGHRVAVLvSSTNERLLKeantkVSAEGkppiEIQSYPqntVTFRQLDL 212 Agrobacterium r...
YP_885990    126 vVDFVPYVYSGTGIAVSKAhpaaitgmddSLCGKKVMVAvGTTAEVLSQeqsdkCTAAGkppvDINRNNhadVSIQQVQN 205 Mycobacterium s...
YP_556523    129 vVSFVRYSVATNGLVVASGnpak--inthDACGHTIALEkGTSPELYWEtaandCTKQGkpkmNLLVLDgegPQMLAIQS 206 Burkholderia xe...
YP_559528    119 rYELVDYWRVASGLLVPAGnprhl-tkfeDLGGTRVAVLlGSRNASVLHqindqLKVAGkppiETVELNtnaAAYQDLAL 197 Burkholderia xe...
YP_001234266 116 vIDEIPYMISHEAVLVKRGkgav--psleSLSGKKVATVtGTTATVLLKaankeLAGARkkpiDIVMFPentQALQQLQF 193 Acidiphilium cr...
AAG47969     190 GRADAYLDDSTSAGYYSQvs---kGKLVLTGevf---hkkPIGHIIKKGdaETATMLAAAIQKLIDDGTYNTILAKYGM 262 Rhizobium sp. TA...
AAK90783     216 GRADATVNGYATSVYTTEkqtgkgVGLQALPdvrl--tvgYLGMLVSKDnpELRDAVIASLQHMVDSGAYQTIMEKWSL 292 Agrobacterium tu...
YP_995523    194 GQVEVALSIDSTGAEYQKr-----GDFDRVLhgl---fptPVALAAKNK--ELSIAVAKVLNDMKADGSLNKLLDQYGV 262 Verminephrobacte...
YP_001209730 170 DKSEVMLAPISEINYLVKsy--kdHEFQILDvpkeyvqsiSINYTTKKDnaALAKRITDGLEATKKNGTFDTLKTKYNL 246 Dichelobacter no...
YP_770049    196 GQVQGVVSIDAVAKEYDSr-----GDFKRAIsgl---ypaPVSVAFKSP--ALADAVSATLKEMKADGSLKALFDKYGL 264 Rhizobium legumi...
YP_001960982 213 KRVDAFVSDAMTLSYFKKlt---gDKYEIGGlpi---dplTIGIVLRKDdpALQEAVRKAYVSLYESGYVEQAAKTWGM 285 Agrobacterium rh...
YP_885990    206 GQVDAYLDTAETIGYYETkt---gAQIQMAGepf---gtiKIGAATLKGntALHDAIQQALQAIEADGTYDKILDQWGQ 278 Mycobacterium sm...
YP_556523    207 GRAEAAGVGYATAVVVAQhs---gGKLSVAEggaapggelDCGVAISKDdpQLGNAIAAALKVMVANGSYDAIFRKWGL 282 Burkholderia xen...
YP_559528    198 GRVDAFVSDTVNINYYRSrs---hGRFEVGGvpv---ppkTWTIAIPKGnvELKQAVQAAIDRMNADGDMQKVVKTWGI 270 Burkholderia xen...
YP_001234266 194 GQVAAYGVAYETARYYIHka---pGQFALGGppy---ykiATGIGIRKNeaALHKAVSSALADMMKNGSYAAIFRKWNL 266 Acidiphilium cry...
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