Conserved Protein Domain Family
RlmK

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COG1092: RlmK (this model, PSSM-Id:224017 is obsolete and has been replaced by 440709)
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 224017
Aligned: 48 rows
Threshold Bit Score: 245.298
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15641366  27 YLVKGRDKSLRRKHPWVFSRGISKVEGTPKLG--ETVDVYSFEGKWLAKAAYSPHSQITARVWSFEQ-EPIDRDFFIKRI 103 Vibrio cholerae
15887690   1 -----------------------------------------------------------------------------MQR 3   Agrobacterium tumef...
17988080     --------------------------------------------------------------------------------     Brucella melitensis
15618442     --------------------------------------------------------------------------------     Chlamydophila pneum...
15806834   1 ----------------------------------------------------------------------MTVLPVPDLL 10  Deinococcus radiodu...
15794472   1 ---------------------------------------------------------------------MTDITPFANRL 11  Neisseria meningiti...
15677232   1 ------------------------------MAsyDKISDGWYRVCPKRSSNRALITVKLPFSTLFRLkPMTDITPFANRL 50  Neisseria meningiti...
15596604   1 --------------------------------------------------------------MNREAlDTLLQHLLAALS 18  Pseudomonas aerugin...
15964142   1 MKEKDRRSKNASVTAAKSRGAEARGGRHEQGLppAKGGPGTKTGPKAAAGGPPPKAAPRKSERPSVQeS--APTRRIEPR 78  Sinorhizobium meliloti
13472800   1 ------------------------------------------MRPHETRGRPDARPREARDAKPDSQpAPNSAPRILARR 38  Mesorhizobium loti
15641366 104 EQAQLLR-NDIIERDgLTGYRLIAAESDGLPGITIDKYQ-DYLVCQLLSAGAEYQK-QTLVEALLHCFP-ECHIYERS-- 177 Vibrio cholerae
15887690   4 TGELPAEhVPVILESsGAGDFHLIDSGNGLK---LEQYG-DYRVVRPEAQALWRPLvPDRVWQNADAIFtGDTDEDG--- 76  Agrobacterium tumef...
17988080     --------------------------------------------------------------------------------     Brucella melitensis
15618442   1 ------------------MDYKLLDSGDGNK---LECFG-PVTLIRPSSIAVWPKSrPE-LWSQAQLQYvREGER----- 52  Chlamydophila pneum...
15806834  11 ARALDRR-AGLP-GAgTTFFRAVHITETGGL-WTLDVAG-DAGILSLYTDLSAEAErDLAAQCGEAAGLsSVYLKRRPpe 86  Deinococcus radiodu...
15794472  12 GKNIKHLmKWAKRNG-IEAWRIYDRDIPQFP-FAVDVYGd-QIHLQEYDTGWLMRS-EEYEAWLAEVLEaVAFVTGFApe 87  Neisseria meningiti...
15677232  51 GKNIKHLmKWAKRNG-IEAWRIYDRDIPQFP-FAADVYGd-RIHLQEYDTGWLMRP-EEYEAWLAEVLEaVAFVTGFApe 126 Neisseria meningiti...
15596604  19 PAPAETRr----------LFHGRGRCWPDLEQLTADWLQgVLLVTLFKEPQPEELQ--ALRRTLEQLTTaPAWAASQGr- 85  Pseudomonas aerugin...
15964142  79 SGEKPAErVPLILETaATAGYHLVDSGDGEK---LEQYG-PYRIVRPEAQALWPKAlPASIWERADAVFtGDTEEDG--- 151 Sinorhizobium meliloti
13472800  39 DGALPAEqLPLILEVaPNADYALLDSGAGQK---LEQYG-PYRIVRPEGQAIWQKAlPAKDWERADAIFtGDTDEEG--- 111 Mesorhizobium loti
15641366 178 DVAVRKKEGLDERVGVLHGELPPKSVVIEENGVKISVDIVGGHKTGFYLDQRDSRFQSMKYVKEKEVLNCFSYTGGFGLY 257 Vibrio cholerae
15887690  77 ----MGRWRFPKEALGETWPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLK---VLNLFGYTGVASLV 149 Agrobacterium tumef...
17988080   1 ------------------------------------------------------------------MLNLFGYTGVASLV 14  Brucella melitensis
15618442  53 -----GAWKNFKRLP-EEWEVAFSDVRCLLKRTPFGHLGVFPEHMGFWPALKQAIEKHKERQ----VLNLFAYTGAGSIF 122 Chlamydophila pneum...
15806834  87 AKHLANVAREVLSPPDPLWGTARPEVTALEEGVPFLIRPGADLSVGLFSDARPARRWVRGHAAGQRVLNTFAYTCGFGLN 166 Deinococcus radiodu...
15794472  88 QIRLKRRERQKGLQQYEKTGKAGDDFVITENGRKFWVNLDKYLDTGLFLDHRNTRKKVGETAAGKRFLNLFSYTGSFTVY 167 Neisseria meningiti...
15677232 127 QIRLKRRERQKGLQQYEKTGKAGDDFVITENGRKFWVNLDKYLDTGLFLDHRNTRKKVGETAAGKRFLNLFSYTGSFTVY 206 Neisseria meningiti...
15596604  86 HLVLQHRYRPDSACEWLSG-EPLETWDIVENGLRFRLDLGRNQNTGLFLDMRLGRRWVQEQAAGRRVLNLFAYTCGFSVA 164 Pseudomonas aerugin...
15964142 152 ----MGRWRFPGEVLGETWPMQLLDTDFLGRFTSFRHVGVFPEQLAHWSWMRDQVAAAGRPLK---VLNLFGYTGVASLI 224 Sinorhizobium meliloti
13472800 112 ----IGRWRFPKMPLGETWPMKHDGIDYLGRFTSFRHVGVFPEQASHWDHMAGLIAAAKRPVK---VLNLFGYTGLASLV 184 Mesorhizobium loti
15641366 258 ALKGGAKRVINADVSQPALDTAKFNAELNGFDISKkrAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQL--DG 335 Vibrio cholerae
15887690 150 AAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAP--IRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEv-WQ 225 Agrobacterium tumef...
17988080  15 AARAGA-EVTHVDASKKAILWARENQEMAGLSDKP--IRWICEDAMKFVQREERRGSFYDIILLDPPAYGRGPSGEv-WQ 90  Brucella melitensis
15618442 123 AAKCGA-RVTHVDASQAAVRWAQRNVEKNAFPERR--IFWVIEDVISFLKKEIRRNKKYQVILLDPPSYGRGPDGEv-FK 198 Chlamydophila pneum...
15806834 167 AALAGAASVKNVDLSRKVLGWGQQNYALSGLAAPD--HDFLYGDVFEWLTRLQRRGDLFDLVILDPPGFARSKAGT--WR 242 Deinococcus radiodu...
15794472 168 AATGGAASSETVDLSNTYLDWARRNFELNGIDTER--HKIVRADVFQYLQTAYGEGRQFDLIVMDPPSFSNSKKMSdiLD 245 Neisseria meningiti...
15677232 207 AATGGAASSETVDLSNTYLDWAKRNFELNGIDTER--HKIVRADVFQYLQTAYGEGRRFDLIVMDPPSFSNSKKMSdiLD 284 Neisseria meningiti...
15596604 165 AIAGGASQVVNLDMARGPLNRGRDNHRLNGHDLGR--VSFLGHELFKSWGKLRKLG-PYDLVIVDPPSFQKGSFVL---- 237 Pseudomonas aerugin...
15964142 225 AAKAGA-EVTHVDASKKAIGWARENQVLARAEKLP--IRWICDDAMKFIQREERRGSRYDIILTDPPKFGRGPNGEv-WQ 300 Sinorhizobium meliloti
13472800 185 AARAGA-EVTHVDASKKAIGWARENQEMAGLGGKP--IRWIVDDAVKFAEREERRGSRYDIILFDPPAYGRGPKGEv-WQ 260 Mesorhizobium loti
15641366 336 ACRGYKDINMLAMQILNPGGTLLTYSCSGLMDQVLFQKIIADAALDAGRDVKFVERFEQAADHPTDTAYPEGFYLKGFAC 415 Vibrio cholerae
15887690 226 LFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVAS-GELVIREAGLDGKTPGRVLSTSLFS 304 Agrobacterium tumef...
17988080  91 LFEHLPAMVDTCRAILSAKPLAVILTAYSIRASFFAIHELMRDRFTGLGGTVES-GELILRERSAD-QSGGRALSTSMFS 168 Brucella melitensis
15618442 199 IDKDLFPLLSLCSKLLADDASYFLLTSHTPGHTPEFLRAIARRSVPTLVSEAWSCGESFCGEG-------VGALPSGSFV 271 Chlamydophila pneum...
15806834 243 AEKDYGRLMAQASAVTAPGGEVLALLNHAGVSAGGLTHMVEQGLSTAGRRGHLTETLGPGRDYPGATHLKVQRWSLN--- 319 Deinococcus radiodu...
15794472 246 IQRDHKKLIDGAVKLLASDGILYFSNNLRSFVLD--------DLVSEQYAVKDISKQSVPEDF-RNKKIHRCWEIRHKS- 315 Neisseria meningiti...
15677232 285 IQRDHKKLIDGAVKLLASDGILYFSNNLRSFVLD--------DLVSEQYAVKDISKQSVPEDF-RNKKIHRCWEIRHKS- 354 Neisseria meningiti...
15596604 238 -TQDYRRILRRLPELLVPGGTLLACINDPAIGPDFLLEETAREAPSLHFVERLEN-PPEFPDVDPAAGLKALLFRNAG-- 313 Pseudomonas aerugin...
15964142 301 LFDHLAAMLDICREILSPDARGLVLTAYSIRASFYSIHELMRETMRGRGGRVES-GELIIREGGLDGTAPGRALSTSLFS 379 Sinorhizobium meliloti
13472800 261 LFEDLPALTDLCRTILTPKPLAVVLTAYSIRASFFAIHALMRDTFAGMGGRVES-GELIIREK-----SAGRALSTSLFS 334 Mesorhizobium loti
15641366 416 KVL 418 Vibrio cholerae
15887690 305 RWE 307 Agrobacterium tumefaciens str. C58 (Cereon)
17988080 169 RWV 171 Brucella melitensis
15618442 272 QWI 274 Chlamydophila pneumoniae CWL029
15806834     ---     Deinococcus radiodurans
15794472     ---     Neisseria meningitidis Z2491
15677232     ---     Neisseria meningitidis MC58
15596604     ---     Pseudomonas aeruginosa PA01
15964142 380 RWV 382 Sinorhizobium meliloti
13472800 335 RWV 337 Mesorhizobium loti
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