Conserved Protein Domain Family
BetA

?
COG2303: BetA (this model, PSSM-Id:225186 is obsolete and has been replaced by 441878)
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]
Statistics
?
PSSM-Id: 225186
Aligned: 74 rows
Threshold Bit Score: 129.881
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
17549388    8 LSEIKEHYDIVVIGSGYGGGIAASRMA-RAGRTVCLLERGREIIPGeypntlaeateefqvhhpdghIGSRTGLYDLHVN 86   Ralstonia solanac...
15890606    1 --MADNHYDAIVVGSGISGGWAAKELT-QKGLKVLMLERGRNIEHVtdyqnadkea--wdyphrnraTQEMKAKYPVLSR 75   Agrobacterium tum...
16125880    7 RARRKNTYDAIVVGSGITGGIAAKELT-EKGLKVLVLERGPMVRHLedyptamldpwqskypqgklpEAELNAHYKVQRR 85   Caulobacter cresc...
16125884   10 PDASHLEADLVIIGGGLAGITLAKELA-GGPLKVVVLESGGR---------------------------EMEPETQALYA 61   Caulobacter cresc...
15791782    1 MAEVLKKVDVVTVGAGWTGGIVAAELT-KAGLNVLSLERGHMQSTEnfny--------------ihdEWRYGINYGLMQD 65   Campylobacter jejuni
15807796   22 PVCRAASPDGQEVPMTVPDSSTPAPLApAPLTPVQQATLRALADTVlpalpgrgdvpfwqlaasdlgVHLALEGYLNTQL 101  Deinococcus radio...
15669641      --------------------------------------------------------------------------------      Methanocaldococcu...
15597461    1 MATTLKPVDAVVVGFGWTGAILAKELT-EAGLNVVALERGENRDTYp--------------------DGAYPNTLDELTY 59   Pseudomonas aerug...
17549125    1 ---MKSKPDFLIVGSGGGGGTIAWVLA-SAGYDVLILEQGRNLAQQlrnpv-----------lpfdpAVHDEELFRLRKP 65   Ralstonia solanac...
13474051    9 YRAANFKPKVCILGSGPAGTTIARKLG-AAGIPVVVLEAGSR---------------------------EFSDESQDFYR 60   Mesorhizobium loti
17549388   87 AQqnvvvgcglggtslinanvslepepqvfeDPRWPRHVREHAdtllkegFARAREMlrptpypgtaaALPKLQANEKSA 166  Ralstonia solanac...
15890606   76 Dyll-------------------------eeATLGMWADEQETp------YVEEKRF-----------DWFRGYHVGGRS 113  Agrobacterium tum...
16125880   86 TGytm------------------------teQTQHFFVRDDEHp------YTEENRF-----------DWIRGYHVGGRS 124  Caulobacter cresc...
16125884   62 G--------------------------------ACVQKADGNK-------DRPLHEFp----------VQSRVRALGGSG 92   Caulobacter cresc...
15791782   66 CS-----------------------------KDTVTFRHDPSGl------ALPYRKMg----------SFLLGNNVGGAG 100  Campylobacter jejuni
15807796  102 PPear------------------------agLLGLLDALASLSf------AAQSQAV-----------RETLLRTVSGIA 140  Deinococcus radio...
15669641      --------------------------------------------------------------------------------      Methanocaldococcu...
15597461   60 NTrg-------------------------klFQNLSKSTVSIRhgindtaLPYRQLS-----------AFLPGDGVGGAG 103  Pseudomonas aerug...
17549125   66 DPk---------------------------rRLRGDYNTFRDLg-----tRDPARAFd----------GGWTGSVLGGGS 103  Ralstonia solanac...
13474051   61 G------------------------------TKVGDFYFDLDIt-------RL--------------------RYMGGSS 83   Mesorhizobium loti
17549388  167 sqMQAPHTFYRPPInvtfDDLpdnrnhvgveqlrcnDCGDCVSGcnnkaknttlmnylpdasnhgaeifcqasvrylerd 246  Ralstonia solanac...
15890606  114 --LLWGRQTYRWSQ----TDF---------------EAN-AKDGi----------------------------------- 136  Agrobacterium tum...
16125880  125 --LTWGRQSYRHSP----IDF---------------EAN-AREGi----------------------------------- 147  Caulobacter cresc...
16125884   93 --HVWGGKCGPLDP----ADFa-------------eRAWIPYSG------------------------------------ 117  Caulobacter cresc...
15791782  101 --VHWNGWTFRFMP----YDFeiqt--------lskQRYGNKLGnd--------------------------------yt 134  Campylobacter jejuni
15807796  141 peAAAGLGALRQLS----LLFg--------------YGMTDEQGq----------------------------------- 167  Deinococcus radio...
15669641      --------------------------------------------------------------------------------      Methanocaldococcu...
15597461  104 --LHWSGVHFRIMP----EELr--------------LRSHYEERy----------------------------------- 128  Pseudomonas aerug...
17549125  104 --VLWGTWSFRPLP----IDFrlkty------yertGELGQLQKeg--------------------------------yn 139  Ralstonia solanac...
13474051   84 --NHWAGWCRVLDK----LDFe-------------pKAWAPDTG------------------------------------ 108  Mesorhizobium loti
17549388  247 GDGWIvhyqyvgtgreaFDAPTLFVKANIVvLSAGTLGsteiLLrsrtqglllseklgkhmsgngdilgfgynnndking 326  Ralstonia solanac...
15890606  137 AVDWPi----------rYEDVSPWYDYVER-FAGISGSr--eGLd----------------------------------- 168  Agrobacterium tum...
16125880  148 AVDWPi----------rYEDLAPWYEHVER-FIGVSGQa--eGLp----------------------------------- 179  Caulobacter cresc...
16125884  118 ---WPi----------sREAMQPYYDRACD-------------------------------------------------- 134  Caulobacter cresc...
15791782  135 LQDWGv----------tYKDMEPYYDRFEK-TCGVSGEp----------------------------------------- 162  Campylobacter jejuni
15807796  168 NPLWAqfe------yagFSSPAPQRNSAITpYVPQDGEvleaDAv----------------------------------- 206  Deinococcus radio...
15669641      --------------------------------------------------------------------------------      Methanocaldococcu...
15597461  129 GKKFIpegmtiqdygvsYEELEPHFDFAEK-VFGTSGT----AHtv---------------------------------- 169  Pseudomonas aerug...
17549125  140 VADWPl----------aYQEMMPYFHVAET-LLGVSGDragmNRsiresa---------------------------wyq 181  Ralstonia solanac...
13474051  109 ---WPi----------rRADIEPYLTEVRD-------------------------------------------------- 125  Mesorhizobium loti
17549388  327 igFGAHSGKGIGPVGPCiTSIidmrdekDWTQRMVIEEGsipGALGRAIVPAMAAASTQigrptstgvaakiahaareve 406  Ralstonia solanac...
15890606  169 --ILPDGEFLPPIPLNF-VEQ-------DVASRLKKAFKgtrHLINSRCANITQELPDQert------------------ 220  Agrobacterium tum...
16125880  180 --HFPDGHYQPPMELNC-VEK-------AFKARSEARFPerrVTIG-RTAHLTDPTEEQlalg----------------- 231  Caulobacter cresc...
16125884  135 -----MLEIDRFPPERP-------------------------NAAEASLQPLALDARDG--------------------- 163  Caulobacter cresc...
15791782  163 --NPLAEKMGAFRSSPYpQEPle----nTKMLKRFESAA---KSSNLHTYRLPASNSKGgytnp---------------- 217  Campylobacter jejuni
15807796  207 --VVGSGSGGGVIAARLaQAGkrv--vvLEAGGHYHEAHfqgRELAAYQTLYYRGGYHPta------------------- 263  Deinococcus radio...
15669641    1 -----------------------------MYDFAIIGSGvagATLAKELRYRYKVAVIE--------------------- 30   Methanocaldococcu...
15597461  170 -kGQVVGKGNPFAADRSdDFPlpa--lrQVYSAQLFRKAa--EELGLHPYDLPAANASGpwtnp---------------- 228  Pseudomonas aerug...
17549125  182 dlRTRFGGEAWFGTDAQwLPDaafplgaYPTTPVGRIVSdgmDHKGMHPFPTPTAIVQPgsa------------------ 243  Ralstonia solanac...
13474051  126 --------ILELPDFRP---------------------------------DVPISDDIR--------------------- 143  Mesorhizobium loti
17549388  407 savlgpyygavnrlqtylimshdngagemklddhdqlrvhwpGVGEQPNFKIgNDRLYDATRALGGTyvpnpiwtdlfkh 486  Ralstonia solanac...
15890606  221 ----------------------------------------pcQFRNKCRLGCpFGGYFSTQASTLPA------------- 247  Agrobacterium tum...
16125880  232 --------------------------------------rtkcQYRNLCIRGCpFGAYYSSNSGGLIA------------- 260  Caulobacter cresc...
16125884  164 ------------------------------------------FFPAPRLFARiSGRTDRPAFDRFRTq------------ 189  Caulobacter cresc...
15791782  218 -------------------------------------dgqdlAPCQYCAYCErFGCEYGAKASPLNTvi----------- 249  Campylobacter jejuni
15807796  264 -----------------------------------------dGNVTLVAGANlGGGSTVNWSNSVPPrddi--------- 293  Deinococcus radio...
15669641   31 ------------------------------------------KGKKPSYASEgKNVEINYVYGLGGS------------- 55   Methanocaldococcu...
15597461  229 -------------------------------------ygvqmGPCNFCGFCSgYACYMYSKASPNLNil----------- 260  Pseudomonas aerug...
17549125  244 ----------------------------------------gfGTQAAIANALnQHRDELDGVLWNRPaeql--------- 274  Ralstonia solanac...
13474051  144 --------------------------------------------WVQLIKSP--AVRFAEKFADELD------------- 164  Mesorhizobium loti
17549388  487 slitvhplggcvmgedaaqgvvnhkgqvfssasgsdvypglyvtdgsviptsLAVNPLLTISAVSERTMALLAQDRGWKI 566  Ralstonia solanac...
15890606  248 ----------------------------------------------------AVATGNLTLRPFSIVKEILYDKDKKKAR 275  Agrobacterium tum...
16125880  261 ----------------------------------------------------AERTGNLVIRPNSIVTELIYDERAGRAS 288  Caulobacter cresc...
16125884  190 ----------------------------------------------------FAEAPNIDVYLYANVVRIRRERNTITGL 217  Caulobacter cresc...
15791782  250 --------------------------------------------------pkAMSTGKYTIRTYSNVTQILKKDGKVTGV 279  Campylobacter jejuni
15807796  294 ------------------------------------------------rqrwASEHGLSDVADPGYDRHIDAVLERMGVS 325  Deinococcus radio...
15669641   56 ----------------------------------------------------GVYSLGNAIKTEIKGYKIDKDIYKEIWE 83   Methanocaldococcu...
15597461  261 --------------------------------------------------paLRQTPLFELRANCNVLKVNLDSDGRQAT 290  Pseudomonas aerug...
17549125  275 ------------------------------------------------wssqIRQACNMCGYCGEYLCWGRTSPKWGTAD 306  Ralstonia solanac...
13474051  165 ------------------------------------------------------KSGNIAVVLNTYATELAGDGKRVTGA 190  Mesorhizobium loti
17549388  567 DYTLPSapskpARPvkpgIEFTEAMKGYVSLAHRQAqgtDPAVYEAAYQAGKDAGSTMAFIVTIRSDDLDQLIANpqhpa 646  Ralstonia solanac...
15890606  276 GVEIID-----AETn---LTYEYTADIIFLNASTLN---STWVLMNSATDVWEGGLGSSSGELGHN------VMD----- 333  Agrobacterium tum...
16125880  289 GVRILD-----AETr---KDEEFHADVIFLCASALN---SAWIMMNSTSSRFPNGFGNASDQLGRN------VMD----- 346  Caulobacter cresc...
16125884  218 DIACLDg-----------KRHKAKATRYVLATGGIE---NVRLLLASDNLGNRHDLVGRFFQGHVTYSNDSDAQR----- 278  Caulobacter cresc...
15791782  280 KFVDTR-------Tm---KEYIQPADIVVLTSYMFN---NAKLLMVSNIG-EQYDPKTGKGTLGRN----YCYQM----- 336  Campylobacter jejuni
15807796  326 EQCSDHn----GPHqr-lVEGADKLGYTFVKAALNL---SPEHYDADKAGHAGFGDQTGAKQGTLNTFLKDAFEA----- 392  Deinococcus radio...
15669641   84 ELKIKAp----K------DDFLNDIDKAFIELGFEKm--EKFIDFDRCNKCGECARKICKAKWTPLNYLKESNAN----- 146  Methanocaldococcu...
15597461  291 GVTYVDa----QGR-----EIVQPAKLVIISAFQFH---NVRLLLLSGIG-KPYDPRTGEGVVGKN----FAYQN----- 348  Pseudomonas aerug...
17549125  307 TTLRELg----QRDnaeiRCNAKTLEVLYDAASRRA---TGVAYLDLTDPDHPRRVEQFAETVIISCGAVQTSRL----- 374  Ralstonia solanac...
13474051  191 KLWSNGq-----------DAGAFSADYFIVCTGGLE---NSRLLLWSN-QRSNGGVVPNATALGRYWMEHPTFEG----- 250  Mesorhizobium loti
17549388  647 tivgtlnapalsarpltvshgvfnlfeafpeqvgvrHMNYNMALTAEDGKeyffsaFKSVPSDHSVLRAWADTstlYVTV 726  Ralstonia solanac...
15890606  334 ------------------------------------HHFRMGATGQVDGF------EDFYFKGRRPAGFYIPR---FRNT 368  Agrobacterium tum...
16125880  347 ------------------------------------HHLGAGATGQAPEF------ADMYFSGRRPNGIYVPR---FRNL 381  Caulobacter cresc...
16125884  279 ------------------------------------EGSAFAASRAEPLDly---apALRYGPHCVIGAGLAA---QKRM 316  Caulobacter cresc...
15791782  337 ------------------------------------NMGTTAFFDEQFNT---------------FMGSGALG---TTSD 362  Campylobacter jejuni
15807796  393 ------------------------------------GARILVGTRAQRVLve---dGRAAGVSAVTTMGDETR---QITV 430  Deinococcus radio...
15669641  147 ------------------------------------IITEFNIKAINYSN-------------YYEILDDKGR---KIKA 174  Methanocaldococcu...
15597461  349 ------------------------------------MATIKAFFDKDVHTn-------------PFVGTGGGG---VAVD 376  Pseudomonas aerug...
17549125  375 ------------------------------------LLLSGPPEGLGNSSgqlgrnAMFHLFGLGMRTVLGEA---FQGR 415  Ralstonia solanac...
13474051  251 ------------------------------------GNAILADYGEFEVD-------AVNEAFFSPTLAAMER---LRIM 284  Mesorhizobium loti
17549388  727 YDGTDNTGPVVGSgvlhiepadfakqmttmkvLNASGEAERLKDLarfGKYFAGVLWESYggvlagnayfnpdapprkkr 806  Ralstonia solanac...
15890606  369 GDDKRK---YLRG-------------------FGYQGSAS----R---SRWEREIAELN--------------------- 398  Agrobacterium tum...
16125880  382 GDAASKRSDYLRG-------------------FGYQGGAG----R---ATWERDRGQGGR-------------------- 415  Caulobacter cresc...
16125884  317 KTGNFTATLFRAN-------------------FANADAKVAAETQ---TISKASAQLDKGq------------------- 355  Caulobacter cresc...
15791782  363 DFNGDNFDHSKEK-------------------FLHGAMIYSVQLG---TRPIQSAPLPAGa------------------- 401  Campylobacter jejuni
15807796  431 RAPQVVVACGALEtp----------------aLLLRSGIGGPAAGrylRLHPAGLVAGIYgedqrawwgp---------- 484  Deinococcus radio...
15669641  175 KNLIISAGGINSP--------------------RILKKMIDDENIg--KNLFIDTFVTVGg------------------- 213  Methanocaldococcu...
15597461  377 DFNADNFDHGPLG-------------------FVGGSPMWVNQAG---SKPIGGLAVPPGt------------------- 415  Pseudomonas aerug...
17549125  416 LHGELGPTGNTSTfd----------------tYFVRDGDGRWIKGghlTSAAKKNPLEDAvna----------------- 462  Ralstonia solanac...
13474051  285 NFGIRLIETPYAG-------------------VKHVIADLACTAP----DMAEWVAYQLSq------------------- 322  Mesorhizobium loti
17549388  807 plnagapevlFFQTEDNVTLRLTRFQGGSKGPVMLVHGLgvgsnifstdtiatnlleflyqhgydvwlldfrvsilleas 886  Ralstonia solanac...
15890606  399 -----------IGADYKDTLTEPGGWTIGMTAFGEMLPY----------------------------------------- 426  Agrobacterium tum...
16125880  416 ----------GFGAARKAALSQPGPWTMGLSGFGEMLPY----------------------------------------- 444  Caulobacter cresc...
16125884  356 ---------aQPNLLGFFAMTEHFPHPESRITLDQSQKD----------------------------------------- 385  Caulobacter cresc...
15791782  402 ---------pTWGAEFKKALNYNFTRAITVGGQGASLPH----------------------------------------- 431  Campylobacter jejuni
15807796  485 pqsgilkqfaDHENGHGFIIEGVQYGPALMASGLPWTGG----------------------------------------- 523  Deinococcus radio...
15669641  214 ----------ILEDSYLNKDISMLVYKKYKNFMLATHYS----------------------------------------- 242  Methanocaldococcu...
15597461  416 ---------pSWGSGWKQAVKDAYTHTVSMDAHGSNMTY----------------------------------------- 445  Pseudomonas aerug...
17549125  463 -------vngSSKAGAFLDQLLVNNRTFEIRLTGDDLPC----------------------------------------- 494  Ralstonia solanac...
13474051  323 ---------nLRCAAQLYVAWEQAPLASNQIELSKTDVD----------------------------------------- 352  Mesorhizobium loti
17549388  887 rqqcdgdqiaRYDFPAAIDRIRQATGaddvqcvvhcygattFFMSLLAGLQGVRSVVCsqiaTDIVVPPATAAKTGLHIP 966  Ralstonia solanac...
15890606  427 ----------HDNRVKLDHDKKDKWGl-------------pVLSMNVEMKQNELDMREd----MVNDAVEMFEAVGIKNV 479  Agrobacterium tum...
16125880  445 ----------ADNRVTLNRDVEDKFGl-------------pTLTMNVTMRDNEMAMRRd----MQAAAAEMLEAAGFQNV 497  Caulobacter cresc...
16125884  386 ----------ALGMPRVNLTWVHGKK---------------DYDDLERSIDGLAAAMG-----------AAGEGRLCWSL 429  Caulobacter cresc...
15791782  432 ----------KNNYLSLDPTYKDAFGm-------------pLLRLTYNFTDQDRALHK----FITDKTAEVAKRMQGVKS 484  Campylobacter jejuni
15807796  524 ----------EAHRDLMSKFHRMATFvsivqdrghgqvtvdDEGNAVHTYALTDDLDArnfrRGVTESIRLHEAAGAEEI 593  Deinococcus radio...
15669641  243 ----------KLLINEIKKDYKDVKE----------------KDIVGIMIKIKDENNG-----VVLDNDVKKEITKEDFK 291  Methanocaldococcu...
15597461  446 ----------RDNYLDLDPTYKDAYGq-------------pLLRMTFDWKDNEIRMSRy---VTEHMRKIAEAMNPKAIS 499  Pseudomonas aerug...
17549125  495 ----------PENRVSLDPTHVDEYGv-------------pVARISRRSISDAAGNKFvgpnEQRLDAAAQGAMKAVFEL 551  Ralstonia solanac...
13474051  353 ----------HAGVPRIELHWKKS-------------------ELERRTLVEGLKLFG-----TTLIEKDLGRVRLMDWI 398  Mesorhizobium loti
17549388  967 SVLDklgvksltaytqANADWLEKLYDTALkgyalveaqgycnnpvchritfmyaslyrhetlneslhdnlhelfgvanm 1046 Ralstonia solanac...
15890606  480 KPSR-----------------GTYAPGMGI-------------------------------------------------- 492  Agrobacterium tum...
16125880  498 RAHD-----------------NGFAPGLGI-------------------------------------------------- 510  Caulobacter cresc...
16125884  430 RRDE-----------------LLASSNASR-------------------------------------------------- 442  Caulobacter cresc...
15791782  485 IKKG---------------AYLKDYSVVPYqs------------------------------------------------ 501  Campylobacter jejuni
15807796  594 VALApgvap--wrrgdDLEAFIGQVAQVPLgaggq--------------------------------------------t 627  Deinococcus radio...
15669641  292 TLARg------------ICKATKYLYKLGVd------------------------------------------------- 310  Methanocaldococcu...
15597461  500 VSVKn------------FGDHFNTRVYQTT-------------------------------------------------- 517  Pseudomonas aerug...
17549125  552 YAARr-----------GALAAAPKPTQAILslv----------------------------------------------- 573  Ralstonia solanac...
13474051  399 ANGE------------D----YPTDEETAGh------------------------------------------------- 413  Mesorhizobium loti
17549388 1047 rtmeHLALMCRTGhlVGFgGEDIYMPHLDRLQLPILFISGAQnecYLPESTRRTYQQLVDRFGPERYSRLVIpgygHIDC 1126 Ralstonia solanac...
15890606  493 ----HEMGTARMG--RDP-KTSVLNGNNQVWDAPNVFVTDGA---CMTSASCVNPSLTYMALTARAA---------EF-- 551  Agrobacterium tum...
16125880  511 ----HEMGTARMG--RDP-KTSVLNAHNQVHECKNVYVTDGA---AMASASCVNPSLTYMALTARAA---------DH-- 569  Caulobacter cresc...
16125884  443 ----HHMGTTRMH--ADP-RKGVVDADGRLHEANNLYVAGSS---VFPTSGIVNPTLTILALTIRLADHLKS----EKKA 508  Caulobacter cresc...
15791782  502 ---tHNTGGTTMG--ADR-ETSVVNTYLQHWDADNLFVVGAG---NFQHNSGYNPTDTVGALAYRCAEGILKyhksGKSL 572  Campylobacter jejuni
15807796  628 vfsaHQMGSARMG--SDP-QTSVADPDGQLHDVPGVWIGDTS---AFPTCSGVNPMVSCMALASRTAEKLLAamegADGG 701  Deinococcus radio...
15669641  311 ----DIYTTIPRG--SHP-GGSLSLVVDEFEVREGLYVCDAS---LFKEALGVPPIVSIIALSKKFVREIL--------- 371  Methanocaldococcu...
15597461  518 ----HLLGGAIMG--SDP-KTSVLNRYLQSWDVHNVFVMGAS---AFPQGTGYNPTGLVAALAYWSAKAIREqylkNPGP 587  Pseudomonas aerug...
17549125  574 --gdHQMGTCRMG--EDP-ATSVVNRYGRLHDVENVFVVDSS---FMPTGLGLNPMVTVVANALRVGTHIVTrlqqGSMP 645  Ralstonia solanac...
13474051  414 ----HHMGGTRMG--IDM-TRSVVDANCKVHGMDNLYVGGSS---VFCTSGQANPTTTITALACRLGEHLSK----VVAV 479  Mesorhizobium loti
17549388 1127 mfgknaamdvypAIL 1141 Ralstonia solanacearum
15890606  552 ------------AVS 554  Agrobacterium tumefaciens str. C58 (Cereon)
16125880  570 ------------AVR 572  Caulobacter crescentus CB15
16125884  509 a-------------- 509  Caulobacter crescentus CB15
15791782  573 a-------------- 573  Campylobacter jejuni
15807796  702 tg---------sGLP 707  Deinococcus radiodurans
15669641      ---------------      Methanocaldococcus jannaschii
15597461  588 lvqa----------- 591  Pseudomonas aeruginosa PA01
17549125  646 gr------------- 647  Ralstonia solanacearum
13474051      ---------------      Mesorhizobium loti
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap