2YB1,3O0F,3E0F


Conserved Protein Domain Family
PHP_HisPPase_AMP

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cd07438: PHP_HisPPase_AMP 
Click on image for an interactive view with Cn3D
Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound
The PHP domain of this HisPPase family has an unknown function. It has a second domain inserted in the middle that binds adenosine 5-monophosphate (AMP). The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to give histidinol. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to the other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.
Statistics
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PSSM-Id: 213993
Aligned: 398 rows
Threshold Bit Score: 120.575
Created: 16-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:The active site of PHP is characterized by a trinuclear metal cluster liganded by histidines, aspartate and glutamate.
  • Structure:2YB1; Bifidobacterium adolescentis Amidohydrolase PHP domain binds 3Mn2+ ions

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #    #                        #                            #          #    
2YB1_A         4 IDLHFHSRTSDGAltPTEVIDRAAARAPALLALTDHDCTGGLAEAAAAAar----rGIPFLNGVEVSVSWGrHTVHIVGl 79  Chromobacterium...
YP_004766176   3 VDLHMHTTCSDGVytPEQLTRMAVDAKLSVMAISDHDTVAAYDGSHSFAp------GVRVIPAIEISSECDgEDVHILGy 76  Megasphaera els...
ZP_04599784    3 VDFHMHSIYSDGVksPEELLRLALECKLSMMALTDHDEIDGIKALRAAQkqldpekTIKIINGCEFSADYKdKSIHILGy 82  Veillonella dis...
ZP_07758302    3 VDLHVHTDCSDGVysPEEVTEKAARAGLSVISLTDHDTLAAYDGTHRLNp------DIRIIPGIEMSSEYAdSDVHILGy 76  Megasphaera mic...
CCB91148       6 ADLHCHSTCSDGTasPKELIDLAIDQGLSGLSITDHDTLNAYSTALPYAkk----lNFPLLTGVEFSCFHQnESVHILGy 81  Waddlia chondro...
YP_003542334   3 IDMHTHSFYSDGTlsPEDLVKEAAEVGLKYICLTDHDTLDGVLSIGDTKsr----yGVELIPGVELTTRYAgMDFHILGm 78  Methanohalophil...
YP_008624      6 ADLHCHTTCSDGTvdPLEIINLAINSGLQGLSITDHDTIEAYKDAAPFAqq----kGLSLIPGVEFSASLGqTSVHILGy 81  Candidatus Prot...
ZP_06299852    6 ADMHCHSTCSDGTcsPEELVDIAFKSGLKGLSITDHDSVEAYQSAVEPAak----lGIKLLSGVEFSAEQDsVNVHILAy 81  Parachlamydia s...
ZP_06560640    3 VDLHMHTTCSDGVytPQELIRRAAQANIRILAITDHDTVEAHVSGYTRSq------EVEVIRAIEMSSRYGeEDVHILGy 76  Megasphaera gen...
YP_001741105  12 VNLHLHTNVSDGNisPKELIKRAQEIGLDLISITDHDTADAYTQIPDNIl------PLRILPGMEISSLYKgDDVHILAy 85  Candidatus Cloa...
Feature 1                                                                                        
2YB1_A        80 gidpaepalaaglksiregrlerarqmgasleaagiagcfdgamrw-cdnpemisrthfarhlvdsgavkdmrtvfrkyl 158 Chromobacterium...
YP_004766176  77 gidtadeglqaycaqfkerrfnraleivdrcralgydidrsaieat-lrqggtvgrphiarqlvakgyfpdvktvfdkll 155 Megasphaera els...
ZP_04599784   83 rfdetnqelkdfiqyfkakreerideiikrcnnagyviskddllkk-fpktqaygrphigqllidggyakdinevfkgil 161 Veillonella dis...
ZP_07758302   77 yidtkneelleycrdfslrrlnravlmaqkcceagydidpcevrty-vqkggtvgrphlarmlikkgyftdiksvfdtll 155 Megasphaera mic...
CCB91148      82 afdlsneqlnafcrkhkerrlqrsllileklkehgmpiaidtk------nlesigrphlamemmrqgyvatmeeafkkyl 155 Waddlia chondro...
YP_003542334  79 gidvkdtklktvlakmsgerlgraktmssllgkhgwevdvssl------scskgivtthdiakavtnrevsafdfhnewl 152 Methanohalophil...
YP_008624     82 gfslkssiildfcqkhhqrrlvrnqlildrltshgmtltleeiypeslisqksmgrphialamvkkgyvptiqkafqeyi 161 Candidatus Prot...
ZP_06299852   82 afafqnpvitkfcqkhaarrvernreildllrmhrmpikeqdvid--lspcgtigrphialaminygyvktlqeafkkyl 159 Parachlamydia s...
ZP_06560640   77 didvrnqalqsycrdysqrrkirarrmfqrcldlgytldaqafeal-lakkgsvgrphiarlliekgyftevgevfhail 155 Megasphaera gen...
YP_001741105  86 gcdfnnsalramtemylngrkerakkmiklladmgmpisleeviai-agsrelivrphiaqvlvnhkfcqtrneafekyi 164 Candidatus Cloa...
Feature 1                                        #                                               
2YB1_A       159 tpgkpgyvshqwaSLEDAVGWIVGAGGMAVIAHPGrydm---grtlIERLILDFQAAGGQGIEVASGSHslDDMHKFALH 235 Chromobacterium...
YP_004766176 156 yrggpayvpyhrrSIDDCVALIRQAGGIAVLAHPGl----------LKRTLDQVLAHDFDGVEVYHPKNr-GRYKEFLKL 224 Megasphaera els...
ZP_04599784  162 rkdspcyvpkvkvAVPHIIDIIHKAGGLAVMAHPKlv--------tSDEYVVEMLAYDFDGMEVYHTKHndDDVKRYKAL 233 Veillonella dis...
ZP_07758302  156 yrggpayvpyerkTINECINLIHKAGGCAVLAHPSl----------VKKGLADVEAQPFDGIEVYHPKNk-GRYDEFTAL 224 Megasphaera mic...
CCB91148     156 gegcscyvsgdafSIEETIDVIRAAGGVAIIAHPHli--------nQPHLVTGLLKMPFDGIEAYYAKIppHQERPWVKI 227 Waddlia chondro...
YP_003542334 153 ssdspcvvgtssmPVKDAISIIQKAGGKAVCAHLLrtlgehgqvdsLLKIASDMVDMGIDGFETFYGQSsmVNVSIMNSI 232 Methanohalophil...
YP_008624    162 gegkscyisgqsfTVEETLDIIHQANGLAIIAHPHli--------eNISITKKLLQLNFDGIEGYYGRFprGKEDRWIKI 233 Candidatus Prot...
ZP_06299852  160 gdgkscfasgkpfSVEETLDVIHKAKGLAVIAHPHli--------dHVPTTKRLLEMNFDGIECYYGKFpaHVHEKWLEM 231 Parachlamydia s...
ZP_06560640  156 hrgapayvpyereSIAACIQLIHQAGGMAVLAHPGl----------IADGLEAVLQYPFDGMEVYHPKQr-GYFDTYEKL 224 Megasphaera gen...
YP_001741105 165 gdnkpayvpkpevSVVDVISIIHQADGFAVIAHPGkl--------tKLSYLEDIIKMGIDGLEVWHPDHyqWEIENFIKI 236 Candidatus Cloa...
Feature 1                    # # 
2YB1_A       236 ADRhGLYASSGSDFHA 251 Chromobacterium violaceum
YP_004766176 225 AEDrHWYVSGGSDFHG 240 Megasphaera elsdenii DSM 20460
ZP_04599784  234 AKEhNLFITGGSDYHG 249 Veillonella dispar ATCC 17748
ZP_07758302  225 AEDrGLLISGGSDFHG 240 Megasphaera micronuciformis F0359
CCB91148     228 GLYrNWIMTGGSDFHG 243 Waddlia chondrophila 2032/99
YP_003542334 233 ADRyGLLKTGGSDYHG 248 Methanohalophilus mahii DSM 5219
YP_008624    234 GNHkNWLITGGSDFHG 249 Candidatus Protochlamydia amoebophila UWE25
ZP_06299852  232 ARNkNWLISGGSDFHG 247 Parachlamydia sp. Hall's coccus
ZP_06560640  225 ACGhHFLMTGGSDYHG 240 Megasphaera genomosp. type_1 str. 28L
YP_001741105 237 ATEkGLFMTGGSDYHS 252 Candidatus Cloacamonas acidaminovorans

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