6ZDF,4ACZ


Conserved Protein Domain Family
Glyco_hydro_99

?
pfam16317: Glyco_hydro_99 
Click on image for an interactive view with Cn3D
Glycosyl hydrolase family 99
This domain, around 350 residues, is mainly found in some uncharacterized proteins from bacteroides to human. Some proteins in this family, annotated as endo-alpha-mannosidases cleave mannoside linkages internally within an N-linked glycan chain, short circuiting the classical N-glycan biosynthetic pathway. This domain reveals a (beta-alpha)(8) barrel fold in which the catalytic centre is present in a long substrate-binding groove, consistent with cleavage within the N-glycan chain, providing a foundation upon which to develop new enzyme inhibitors targeting the hijacking of N-glycan synthesis in viral disease and cancer.
Statistics
?
PSSM-Id: 435273
Aligned: 4 rows
Threshold Bit Score: 611.516
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6ZDF_B         18 PLNNYLHVFYYSWYGNPQFDGKYIHWNHPVLEHWD-PRIAK-NYPQGRHNPPDDIGSSFYPELGSYSSRDPSVIETHMRQ 95  human
Q5GF25         98 PLNYFVHAFYYSWYGNPQFDGKYVHWNHPVLEHWD-PRIAK-NYPQGRHSPPDDIGSSFYPELGSYSSRDPSVIETHMKQ 175 Norway rat
4ACZ_A         37 TLDDHTISFYYNWYGNPSVDGEMKHWMHPIAL--A-P--GHsGDVGAISGLNDDIACNFYPELGTYSSNDPEIIRKHIRM 111 Bacteroides th...
jgi:Sama_0297   1 mgnsrLHVFYYGWYGNPQQDGQWQHWNHRVLPYGDiPLEGRlDFPGA-----DDIGANFYPSLGSYSSHDPEIIEQHLEM 75 
6ZDF_B         96 MRSASIGVLALSWYppdvnDENGEPTdNLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMYKNVKYIIDKYGNHPAFYRYK 175 human
Q5GF25        176 MRSASIGVLALSWYppdasDENGEATdYLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMHQNVKYIIDKYGNHPAFYRYK 255 Norway rat
4ACZ_A        112 HIKANVGVLSVTWW-----GESDYGN-QSVSLLLDEAAKVGAKVCFHIEPFNGRSPQTVRENIQYIVDTYGDHPAFYRTH 185 Bacteroides th...
jgi:Sama_0297  76 MRQAGIGVVSVSWL-----GADDFAA-RSIDFFMDKAAEKGLQINFHIEP-NYRSAEEFHAIIAELMRKFGTHPALYRYR 148
6ZDF_B        176 TKtgnalPMFYVYDSYITKPEKWANLLTTSGSRSIRNSPYDGLFIALLVEEKHKYDILQSGFDGIYTYFATNGFTYGSSH 255 human
Q5GF25        256 TRmghslPMFYIYDSYITKPKTWANLLTPSGSQSVRGSPYDGLFIALLVEEKHKYDILQSGFDGIYTYFATNGFTYGSSH 335 Norway rat
4ACZ_A        186 GK-----PLFFIYDSYLIKPAEWAKLFAAGGEISVRNTKYDGLFIGLTLKESELPDIETACMDGFYTYFAATGFTNASTP 260 Bacteroides th...
jgi:Sama_0297 149 GK-----PLYYVYDSYKMPVSEWQKLLLPGGELSLRTPELDGQFIGLWVNQGEEAFFLDTGFDGFYTYFASEGFVWGSTS 223
6ZDF_B        256 QNWASLKLFCDKYNLIFIPSVGPGYIDTSIRPWNTQNTRNRINGKYYEIGLSAALQTRPSLISITSFNEWHEGTQIEKAV 335 human
Q5GF25        336 QNWNKLKSFCEKNNMIFIPSVGPGYIDTSIRPWNTQNTRNRINGKYYEVGLSAALQTQPSLISITSFNEWHEGTQIEKAV 415 Norway rat
4ACZ_A        261 ANWKSMQQWAKAHNKLFIPSVGPGYIDTRIRPWNGSTTRDRENGKYYDDMYKAAIESGASYISITSFNEWHEGTQIEPAV 340 Bacteroides th...
jgi:Sama_0297 224 TNWPYLAGWASRHGKLFIPSVGPGYADDRIRPWNGANFKAREQGRYYDRMFSQALNTKPDIVTITSFNEWHEGTQIEPAV 303
6ZDF_B        336 PKRTSNTVYLDYRPHKPGLYLELTRKWSEKYSK 368 human
Q5GF25        416 PKRTANTVYLDYRPHKPSLYLEITRKWSEKYSK 448 Norway rat
4ACZ_A        341 SKKCDAFEYLDYKPLADDYYLIRTAYWVDEFRK 373 Bacteroides thetaiotaomicron VPI-5482
jgi:Sama_0297 304 VKQLPDYRYLDYGDLPEDYYLQRTLDWSRKLSA 336
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap