Conserved Protein Domain Family
CCDC50_N

?
pfam15295: CCDC50_N (this model, PSSM-Id:405883 is obsolete and has been replaced by 464621)
Coiled-coil domain-containing protein 50 N-terminus
Statistics
?
PSSM-Id: 405883
Aligned: 13 rows
Threshold Bit Score: 99.7549
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_967502      5 KVRDNEALPkgRVTEVCQEWMVREDGALAYRLQNQEITEHLSGNKYRNALVREDFPRAKSEQLREQqlaEQTALIYQRML 84  red flour beetle
XP_005162350   4 LEVDQSNLP--RVQEVCQCFAVLEDGALAHNLQEQEIEQYYSSNVERSQLVQRDIRVAKRLQDEEQ---QRVQTPQHQTT 78  zebrafish
NP_001120372   4 IPIDKSNLP--RVNDVCRDFAVLEDGALAHCLQEQEIEQHYASNIRKNKLVQKDIRIAKKLQDEED---LQCKVFSIEKQ 78  tropical clawed...
XP_015785762   4 AGLTEEDIPegKVNQVCREWLVREDNAIAYRLQDEEINQFYEGNRYKNQVFRSDLEQARYIHENEE---FERMMEFEREK 80  two-spotted spi...
XP_002120528   7 SSIEQEPVR--PVTEAVQEYRVIEDGALAYHLQEREIEHHYACNVENRRTVMQDIRTAQQLQDEED---RRARIFTLEQQ 81  vase tunicate
4_pfamImport   1 ---------------VCRDFAVLEDHSLAYNLQEQEIESHLASNVHKNRLVQKDLIVAKKLQEEED---EKAKIKSQKQH 62 
1_pfamImport   1 ISIDQSKLP--GVKEVCRDFAVLEDHSLAHNLQEQEIEHHLATNIQRNRLVKTDLQVAKQLQEQED---LRAQTRIKNRH 75 
NP_001026486   4 IGIDQSKLP--GVKEVCRDFAVLEDHTLAHNLQEQEIEHHLATNIQRNRLVQHDLQVAKQLQEEED---LKARAQIQKRQ 78  chicken
2_pfamImport   1 VSLEARRVS--CVREVCRDFAVLEDHTLAHSLQEQEIEHHLASNIQRNRLVQHDLRVAKQLQE-ED---LKAQAQLQKRY 74 
XP_690155      4 TDIDKSHLP--GVYDVCQCFSVLEDGALAQSLQEQEIEHFYSTNIQKNQTVQNDVRLARRLQEEEE---------ERANL 72  zebrafish
3_pfamImport   1 VEIDQSNLP--RVQEVRQCFAVLEDGALAHNLQEQEIEQYYTTNIHKNQLVQNDIRVAKRLQDEEEeeqAQQSTLHRQSS 78 
5_pfamImport   1 -----SNLP--RVQEVCQNFAVLEDGVLAHSLQEQEIEQYYTTNIQKNQLVQNDIRVARRLQQEEEqqrAQQSALLRQVS 73 
XP_011475763   2 aeleidqsnlprvHEVCQTFAVLEDGALAHNLQEQEIEQYYSTNVQKNQLVQNDIRLAKRMQDEEEeqqAQQSALLRQAS 81  Japanese medaka
XP_967502     85 AEQEEQDNQVAKQLAEELERe---ERQKRRFIEIQDQNVARQLLHRERVSVERHA 136 red flour beetle
XP_005162350  79 RQLEERDSEYARMIQEEIQR----CAEEARRREVEDEEIAKRIQEEELCLRHRSS 129 zebrafish
NP_001120372  79 KEIEELDSEYARVIQEELQR----KAQECLQREEEDKEIAKRLQQLEEEELHRKS 129 tropical clawed frog
XP_015785762  81 QRLADEDERIAKEIQEALLEeerrKAEELNIIAEEDEKLALRLQEKEKERLKRKK 135 two-spotted spider mite
XP_002120528  82 AQLEKTDEKLAEAYQEKLLKkhlqKEQERKEREERDNEIAFMLMERERRRERRQQ 136 vase tunicate
4_pfamImport  63 GDIERQDNEIAQEIQEELIR----QAELQRLQEEKDAAIARKLQEKEMKEERRRK 113
1_pfamImport  76 SELEVLDSEIAQEIQDRLVI----EAERRRQQEEKDEDIARLLQERE---ERRRK 123
NP_001026486  79 KDLERQDSEIAQEIQVKLVF----EAEQRRRQEEKDEDIARLLQQKELQEEKKRK 129 chicken
2_pfamImport  75 KDLEQQDCEIAQEIQEKLAI----EAERRRIQEKKDEDIARLLQEKELQEEKKRK 125
XP_690155     73 QQIEEEDCRYALMIQQQLQR----CAEEARRQEKQDEEIAKQLQEEEEMEMRRQR 123 zebrafish
3_pfamImport  79 REME--DFEYARVVQEEIQR----CAEEARRREQEDKEIAKQMQEEEKERITRIS 127
5_pfamImport  74 RQMEEQDFEYARVIQEELQR----RAEEVHRREQDDEEIAKQLQEEEEQQVRRRS 124
XP_011475763  82 RQIEEQDLEYARVVQEELQR----SAEEVRRREQHDAEIAKRLQEEEEQWMRRSS 132 Japanese medaka
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap