Conserved Protein Domain Family
CE4_IcaB_5s

?
cd10965: CE4_IcaB_5s 
Putative catalytic polysaccharide deacetylase domain of bacterial intercellular adhesion protein IcaB and similar proteins
The family is represented by the surface-attached protein intercellular adhesion protein IcaB (Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase, EC 3.5.1.-), encoded by Staphylococcus epidermidis icaB gene from the icaABC gene cluster that is involved in the synthesis of polysaccharide intercellular adhesin (PIA), which is located mainly on the cell surface. IcaB is a secreted, cell wall-associated protein that plays a crucial role in exopolysaccharide modification in bacterial biofilm formation. It catalyzes the N-deacetylation of poly-beta-1,6-N-acetyl-D-glucosamine (PNAG, also referred to as PIA), a biofilm adhesin polysaccharide. IcaB shows high homology to the N-terminal NodB homology domain of Escherichia coli PgaB. At this point, they are classified in the same family.
Statistics
?
PSSM-Id: 200587
Aligned: 7 rows
Threshold Bit Score: 250.768
Created: 13-Jun-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative activeputative metal
Feature 1:putative active site [active site]
Evidence:
  • Comment:based on similarity to other CE4 superfamily members

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                 ##                                                            #    #   
Q9CHP6       100 IGKAVVITFDDIDkSLPENAYPIMKKLDLPFTQFIITGKVGQtid-gsqMSTWKEIKKMNEn--pLVTSGLHTNDLHYQE 176 Lactococcus lac...
ZP_06755753  154 ARQYAVITFDDVDsTVYANAFPILKRLNYPFTVFVITSQTGSydk-gtsLATWSQIRRMVDs--pLVTVGLHTNNMHFMV 230 Scardovia inopi...
YP_003238836 105 PGKLVLVTFDDGDlSVYRHAFPVLKKRKIPFLFFVIAGQVGRkwe-gfsMCSWEQIKEMVAs--gLCVVGLHTYDLHYWD 181 Ammonifex degen...
Q5HKP8       111 PKRSVWINFDDMDqTIYDNAFPVLKKYHIPATGFLITNHIGStnfhnlnLLSKKQLDEMYEt--gLWDFESHTHDLHALK 188 Staphylococcus ...
ADF40655     111 PKRCVWISFDDIDrTVYQNAFPILKKENIPFTLYVIAGQVGAtdfqnlnMASWSQLKEMKAs--gLATIGSHTYDMHRLE 188 Bacillus megate...
YP_004397511 120 RGKYVVITFDDVDrTSIDNAFPILEKLHYPFTQSIITGNTGWykq-gtkLATWPAIQRLQKqadsLVTFGVHTNRMHYLV 198 Lactobacillus b...
ADC88632     109 PPKSVWISFDDMEqSVYDNANPIIEKYKIPVTGFVITGQIGNenfhnlnLSDLSTLKILNHs--kYWTFSSHTDNLHSLT 186 Staphylococcus ...
Feature 1                                                 ###                                    
Q9CHP6       177 Nfepils--tniskkVVQKDYQKSQKAFDEKLdqkGKVFAYPYGAQNKDLEDYMLQDG-IQGIFTLSPGVVtneTLYSNI 253 Lactococcus lac...
ZP_06755753  231 Knkpvlt--sqqgteRFAADYQESQKILTQRLgitARYFAYPYGESTKSAQKYLTKKGiITAGLTDGVIHEy-tSLSQPL 307 Scardovia inopi...
YP_003238836 182 SqakkpvfllpgrerLFAEDTARGTACLKEHLglkTRYFAYPYGFGTPTTDEILRTQG-FSLVFTLRAKVNr-pGDAPFV 259 Ammonifex degen...
Q5HKP8       189 Kgnkskf--ldssqsVASKDIKKSEHYLNKNYpknERALAYPYGLINDDKIKAMKKNG-IQYGFTLQEKAVtpdADNYRI 265 Staphylococcus ...
ADF40655     189 Edkplfl--tpakysAFAEDLRKSKETIKNHLgidPVYFAYPYGNTNDDVAKIVKDAG-FHQAAILAPHLItkdNDPYYL 265 Bacillus megate...
YP_004397511 199 Dhgipvfn-ipanytRFKRDYAVSQDVLKEKVgykSPIFTYPYGSGDYQIQKFLANRPgLKVILTLNDGLVtnhSNLKLT 277 Lactobacillus b...
ADC88632     187 Kdrkaim--tstpddKLKDDIVKSNLFIHKQFhknNDSIAYPYGEVSNQNIKVLKKEG-IRYGYTLEDKAVkpsENNYRI 263 Staphylococcus ...
Feature 1                          
Q9CHP6       254 PRLIVTKDn-wKTIKHWL 270 Lactococcus lactis subsp. lactis
ZP_06755753  308 PRSLVTVKswkKVVKPWI 325 Scardovia inopinata F0304
YP_003238836 260 GRVLVTPDs-wPQVAAWA 276 Ammonifex degensii KC4
Q5HKP8       266 PRILVSNDafeTLIKEWD 283 Staphylococcus epidermidis RP62A
ADF40655     266 NRIVVYNKtfqNLILPWL 283 Bacillus megaterium DSM319
YP_004397511 278 PRIIVNNYs-wPSITKWI 294 Lactobacillus buchneri NRRL B-30929
ADC88632     264 PRVLMNEDafnKLIKKWD 281 Staphylococcus lugdunensis

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap