1LRH,1LR5


Conserved Protein Domain Family
cupin_ABP1

?
cd02220: cupin_ABP1 
auxin-binding protein 1, cupin domain
Auxin-binding protein 1 (ABP1) is a soluble glycoprotein receptor that binds the plant hormone auxin, indole-3-acetic acid (IAA). ABP1 belongs to the ancient and functionally diverse germin/seed storage 7S protein superfamily. It is an important mediator of auxin action in plants and is essential for cell cycle control. Cellular auxin responses typically depend on auxin concentrations that mainly result from intercellular auxin transport and auxin biosynthesis, as well as metabolism. The functional inactivation of ABP1 results in cell cycle arrest, showing that ABP1 plays a critical role in cell cycle regulation, acting at both the G1/S and G2/M checkpoints. ABP1 is ubiquitous among green plants, found mainly within the endoplasmic reticulum (ER) and in smaller quantities at the cell surface associated with the plasma membrane. In Arabidopsis thaliana, ABP1 null mutations result in embryonic lethality while decreased ABP1 expression leads to severe retardation of leaf growth.
Statistics
?
PSSM-Id: 380349
Aligned: 20 rows
Threshold Bit Score: 236.157
Created: 21-Oct-2004
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1LRH: Zea mays auxin-binding protein binds Zn2+ and the synthetic auxin 1-naphthalene acetic acid; contacts at 4.0A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                       #                       # #       ## # #   # #                
1LRH_A      7 SLVRDIsQMPQSSYGieGLSHITVAGalnHGMKE-----VEVWLQTISpgQRTPIHRHSCEEVFTVLkgKGTLLMGSss- 80  maize
1LR5_A      7 SLVRDIsQMPQSSYGieGLSHITVAGalnHGMKE-----VEVWLQTISpgQRTPIHRHSCEEVFTVLkgKGTLLMGSss- 80  Zea mays
AAF37576   37 PVVRNLtELEQDSYGrpGLSHMTIAGavhHGMKE-----VEVWMQTFApnSGTPIHRHECEEVFITLkgYGTLYLSRnrd 111 Ceratodon purpureus
P13689     45 SLVRDIsQMPQSSYGieGLSHITVAGalnHGMKE-----VEVWLQTISpgQRTPIHRHSCEEVFTVLkgKGTLLMGSss- 118 Zea mays
ABA98773   50 SLVKDVsKMYQSNYGreGFSHITIAGalaHGMKE-----VEVWLQTFGpgQRTPIHRHSCEEVFVVLkgKGTLLLGSss- 123 Oryza sativa (japo...
BAA25433   50 SVVKDInQMHQSNYGleGLSHITVGGalaHGMKE-----VEVLLETVSagQRTPIHRHSCEEVFVVLkgRGTLFLGSts- 123 oat
CAA62956   34 PVVRNIsELPQNSYGrgGLAHTTVAGsllHGLKE-----VEVWLQTLSpgSGTPIHRHSCEEVFVVLkgSGTVYLAPnsh 108 Fragaria x ananassa
PNR55229    2 SVVRNLtELGQDSYGrpGLMHMTIAGavhHGMKE-----MEVWMQTFApnSGTPIHRHECEEVFITLkgHGTLYLSRsre 76  Physcomitrella patens
EFJ07425    9 LVVRNLsDIPQDSYGrpGLSHMTVAGavhHGMKE-----LEVWLQTFApgSGTPIHRHDCEEIFLVLkgKGTLFLAEpg- 82  Selaginella moelle...
CDP18622    9 PLVRNVsKLPQGSFRipGLSHSTLAGsvlHGMKEarhyfVEVWLQTLApgARTPIHRHSCEEAFLVLkgSGTLYLTTnmh 88  Coffea canephora
Feature 1                              #                                            #      
1LRH_A     81 lkYPGQPQEIPFFqNTTFSIPvNDPHQVWNSdehEDLQVLVIISRppaKIFLYDDWSmpHTAAVLKFpfvWDEDCFE 157 maize
1LR5_A     81 lkYPGQPQEIPFFqNTTFSIPvNDPHQVWNSdehEDLQVLVIISRppaKIFLYDDWSmpHTAAVLKFpfvWDEDCFE 157 Zea mays
AAF37576  112 hdVPGKPEELPIYpNATFTIPvDAVHQVKNTkqgEDLQLFVTISRppmKSFTYKDWTtpHLSAVPEMk-eWDKQVKF 187 Ceratodon purpureus
P13689    119 lkYPGQPQEIPFFqNTTFSIPvNDPHQVWNSdehEDLQVLVIISRppaKIFLYDDWSmpHTAAVLKFpfvWDEDCFE 195 Zea mays
ABA98773  124 mkYPGQPQEIPVFqNSTFSVPvNDPHQVWNSdehEDLQVLVIISRppvKIFTYDDWSvpHTAAKLKFpyfWDEDCLP 200 Oryza sativa (japonic...
BAA25433  124 lkYPGTPQEIPFSqNSTFTVPiNDPHQVWNSdehEDLQFLVIISRppvKVFLYDDWSmpHTAAKLKFpflWDEDCLA 200 oat
CAA62956  109 ekYPGKPQEFSIFaNSTFQIPvNDVHQIRNTnehEDLQVLVVISRppvKVFIYENWSmpHTASKLKFpyyWDEGCLE 185 Fragaria x ananassa
PNR55229   77 ldAPGEPEEFQIYpNATFTIPvDSVHQVRNTnqgEDLQVVVTISRppmKSFIYKEWStpHAEAVYEPr-eWDKEDKL 152 Physcomitrella patens
EFJ07425   83 leYPGEVVQFHISgNSTMTIPvNSVHQIINTs-nEDLQFYVIISRppiRVFVYRSFLvpHTEAVTHFpypWDLKTLT 158 Selaginella moellendo...
CDP18622   89 peFPGNPHEFRIFsNSTFLVPiDDVHQANSPl-ySPLFFILFLFFw--RRFTYDDWFmpHTAAKLLFpifWDAVCYQ 162 Coffea canephora

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap