1KQQ,1IG6,1KKX,1RYU,2JRZ,2RQ5


Conserved Protein Domain Family
ARID

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cd16100: ARID 
Click on image for an interactive view with Cn3D
ARID/BRIGHT DNA binding domain family
The AT-rich interaction domain (ARID) family of transcription factors, found in a broad array of organisms from fungi to mammals, is characterized by a highly conserved, helix-turn-helix DNA binding domain that binds to the major groove of DNA. The ARID domain, also called BRIGHT, was first identified in the mouse B-cell-specific transcription factor Bright and in the product of the dead ringer (dri) gene of Drosophila melanogaster. ARID family members are implicated in normal development, differentiation, cell cycle regulation, transcriptional activation and chromatin remodeling. Different family members exhibit different DNA-binding properties. Drosophila Dri, mammalian ARID3A/3B/3C and ARID5A/5B, selectively bind AT-rich sites. However, ARID1A/1B, Drosophila Osa, yeast SWI1, ARID2, ARID4A/4B, JARID1A/1B/1C/1D, and JARID2, bind DNA without sequence specificity.
Statistics
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PSSM-Id: 350627
Aligned: 228 rows
Threshold Bit Score: 45.8117
Created: 28-Mar-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNA
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1KQQ; Drosophila melanogaster Dead Ringer binds DNA through its ARID domain, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                         #######                         
1KQQ_A         24 KRKEFLDDLFSFMQKRgt---------------------------piNRLPIMAKSVLD-LYELYNLVIArggl--vdvi 73   fruit fly
XP_003850874  943 VYATFEKMLRPFLPDPhrhafnttlnlfddratfqqlfdrdvaglvpIGPLSLGRNVVD-PLRLYSAVEDrgfd--risn 1019 Zymoseptoria ...
ELQ32966      418 TYHEFYDLLGEYVKVCpn---------------------------tiDTKPRIRGVRLD-LFKLQQAVESqdg-----dl 464  Magnaporthe o...
EPE03231      373 KQQEFLGKLEVYNDYTgv---------------------------yvPPSFFIGGRYLE-TCSLWFAVEEqgv-----sl 419  Ophiostoma pi...
KFY12597      377 HKAKFIGNLGLFLSSKnr---------------------------afEHTFDLDGRKLE-LYDLWNAVNKpefggfrrve 428  Pseudogymnoas...
XP_009223617  447 DGEAQEDQLNRFEKLIieyeae--------------------ypdaiDPAPIIRGEEIS-VWDLYRAFRSqnl-----pl 500  Gaeumannomyce...
KXJ90490      424 ERAEFYADYNVFVEATnq---------------------------kpMHFPSVAGHSFQ-LWDLWREVMAlqm-----dp 470  Microdochium ...
KZS92372      482 DLGKFEGFFGEYLKRQklde------------------------anfPREVTIEGNTLH-LHDIHKAVMQfggg--qnvs 534  Sistotremastr...
KZV72601      449 EENMFVRMWPMWVKQTgqmls----------------------mddiPPPETLQGKPSIsLYRLHAAVWQvgg----hdt 502  Peniophora sp...
XP_016642771  357 EKARFYKDLAIFIETEedggr----------------------nlkmKRRHRFQGVTFD-LWDLYQTVLRqnc-----pv 408  Pseudallesche...
Feature 1           # ##  #                    # ### #           
1KQQ_A         74 NKKLWQEIIKGLhlps----------sitSAALTLRTQYMKYLYPYE 110  fruit fly
XP_003850874 1020 NLTQWDEIADYLgcanqt------tahseTAGHALRDAYLTILGGNR 1060 Zymoseptoria tritici IPO323
ELQ32966      465 DECDWSLVCEDIgfes----------pdpELAKTVEACYRTNLQGFI 501  Magnaporthe oryzae Y34
EPE03231      420 EDVDWPKIAASLgfke---------tgrpSLWKQLAGWFHQNLKEFD 457  Ophiostoma piceae UAMH 11346
KFY12597      429 KANKWLQVAVKLgint---------yrheTADAALRQAYCDKLVEYD 466  Pseudogymnoascus pannorum VKM F-4246
XP_009223617  501 DRCDWAQVAASLgfdt---------tkdpEVCGKVSECFQRNLEHFV 538  Gaeumannomyces graminis var. tritici R3-111a-1
KXJ90490      471 AQRDWQLVTENLgidw---------nehpEAPQHVELIYMQNLSLFE 508  Microdochium bolleyi
KZS92372      535 ARNGWAHVAQSMniqvn-------gvsmeTVGQRLREIHGRLLGNFE 574  Sistotremastrum niveocremeum HHB9708
KZV72601      503 VGERWPMVAGRLgwgtmtdptqgaalappMAAERLRQHHVTHLKEFD 549  Peniophora sp. CONT
XP_016642771  409 DDVDWELVAEDMdldw---------vagpEVAELLEGCWDKYLGKFH 446  Pseudallescheria apiosperma

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