1PQZ,1U58


Conserved Protein Domain Family
IgC1_MHC_I_M144

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cd21028: IgC1_MHC_I_M144 
Click on image for an interactive view with Cn3D
Class I major histocompatibility complex (MHC) homolog m144; member of the C1-set of Ig superfamily (IgSF) domains
The members here are composed of the immunoglobulin (Ig) domain of major histocompatibility complex (MHC) homolog m144 class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta-2-microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Statistics
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PSSM-Id: 409619
Aligned: 4 rows
Threshold Bit Score: 212.563
Created: 15-Oct-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                          # #                              ## ###     # #            
1PQZ_A    138 AVSPQLEVERRSSGREGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTsKQHHDPLPSGQGLYQKHIDVYVDGGLEHV 217 Murine cytomegalov...
1U58_A    143 AVSPQLEVERRSSGREGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTsKQHHDPLPSGNGLYQKHIDVYVDGGLEHV 222 Murine cytomegalov...
ACE95317  163 AVSPQLEVERRSSGREGGMRLRCFARDYYPADLEIRWWKDDGGGGALLQTtNQNHAPLPSGNGLYQKHIDVYVDGGLEHV 242 Muromegalovirus G4
AWV68230  162 AVSPQLEVERRSSGREGGMRLRCFARDYYPADLEIQWWKDDGGDGALAQV-SHRQDPLPSGNGLYQKHIDVYVDGGLEHV 240 Murid betaherpesvi...
Feature 1                          
1PQZ_A    218 YSCRVKGIATGLELQIVRWKG 238 Murine cytomegalovirus
1U58_A    223 YSCRVKGIATGLELQIVRWKG 243 Murine cytomegalovirus
ACE95317  243 YSCRVKGIATKLELQIVRWKG 263 Muromegalovirus G4
AWV68230  241 YSCRVKGIATGRELQIVRWKG 261 Murid betaherpesvirus 1

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