Conserved Protein Domain Family
Rab36_Rab34

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cd04108: Rab36_Rab34 
Rab GTPase families 34 (Rab34) and 36 (Rab36)
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Statistics
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PSSM-Id: 206693
Aligned: 5 rows
Threshold Bit Score: 311.427
Created: 9-Aug-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Comment:Based on sequence similarity with other Rab isoforms.
  • Comment:The active conformation of Rab is stabilized by interations between the gamma phosphate of GTP and two critically conserved residues, Thr in switch I and Gly in switch II

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #######         #     ##                         #                      
AAQ16115     102 HFHGQVSAACQRRNTGTVGFCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAF 181 human
Q9BZG1        53 SKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 132 human
NP_001006769  53 SKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIAF 132 western clawed ...
NP_001006094  54 SKVIVVGDLAVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAVIIVF 133 zebrafish
CAG08873      36 AKVIVVGDVSVGKTCLISRFCKGFFEKNYKATIGVDFEMERFEVLGVPFSVQLWDTAGQERFKCIASTYYRGAQAIIVVF 115 Tetraodon nigro...
Feature 1                                         ## #                            ###            
AAQ16115     182 DLTDVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDLlSGAACEQAEADAVHLAREMQAEYWSVSAKt----------- 250 human
Q9BZG1       133 NLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLsTPAQYALMEKDALQVAQEMKAEYWAVSSLt----------- 201 human
NP_001006769 133 DLTDVSSLEHTKQWLQDALKENDPSSALLFLVGSKKDLsPPAQYALMEKDAIKVAKEMQAEYWSVSSLt----------- 201 western clawed ...
NP_001006094 134 DLTDVASLEHTRQWLEDAMKENDPTSVLLFLVGTKKDLsSPAQYSLIEQDAIKIADQMKAEYWALSALs----------- 202 zebrafish
CAG08873     116 DLSSVTSLAHARQWLEDAMKENDPSSVLLFLVGTKKDLsSPDQLYQTEQEAIRLSEEIKAEYWAVSAKsggssagahars 195 Tetraodon nigro...
Feature 1                                                                                  
AAQ16115     251 -------------GENVKAFFSRVAALAFEqsvlqdlerqssarlqvgngdliqmegsppetqeskrpssLGCC 311 human
Q9BZG1       202 -------------GENVREFFFRVAALTFEanvlaeleksgarrigdv----vrinsddsnlyltaskkkPTCC 258 human
NP_001006769 202 -------------GENVKEFFFRVASLTFEssvlaelektnarrigev----vrinsndrnlyqcskknkTNCC 258 western clawed frog
NP_001006094 203 -------------GENVRDFFFRVASLTFEanvlaeleksgsrrigev----vqissnsnnlyatskkkqSNCC 259 zebrafish
CAG08873     196 sapatlisssgvpGDGVRDFFFRVASLTFEaivlsel--------------------------etggskhVGDI 243 Tetraodon nigroviridis

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