1QO0


Conserved Protein Domain Family
AmiR

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COG3707: AmiR (this model, PSSM-Id:226230 is obsolete and has been replaced by 442921)
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Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription]
linked to 3D-structure
Statistics
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PSSM-Id: 226230
Aligned: 15 rows
Threshold Bit Score: 207.571
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1QO0_E     2 SANSLLGSLRELQv---LVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAFDVPVDVVFTSIFQNRHHdEIAALLAAGT- 77  Pseudomonas aeruginosa
15891055  10 MTLRDLTILVIDE----NAIRASIIEEGLREAGYQRVTVIHEVNGVARTIETLQPDVIFIDLENPNRD-MMEHLFQLTRt 84  Agrobacterium tumef...
16119760   1 MSFALLRDLRDLKv---LVIHPRTSEGEFLVDHLRRIGCTVSCLWPVPAELPHGTDVVFLAMEDEARP-EIERLLKCLPn 76  Agrobacterium tumef...
16124866  46 LGLRAMRVLVIDP----DAARAALVAQGL--EGVQPLEVRHAAVYNEAEVVAFAPDVVVIAAESPDRD-TLDSLRESSQ- 117 Caulobacter crescen...
15827661   9 DAATPHRVLIAED----EALIRLDLAEMLRDEGYDIVGEAADGQEAVELAERHKPDLVIMDVKMPRRDgIDAASEIASKr 84  Mycobacterium leprae
15841081  12 DAAVPRRVLIAED----EALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDgIDAASEIASKr 87  Mycobacterium tuber...
15596982   1 ----MLRILLIDD----TPKKVGRLRAALLESGFEVVDESGLTIDLPARVEALRPDVILIDTESPGRD-VMEQVCLVSRd 71  Pseudomonas aerugin...
17545101   1 --MAPTRVLLVRDpldaEQVNLELIRAGLAEAGFVDVGVVDADLMLPERIAQTQPDMVIVASESAARD-TIEHVCVATQh 77  Ralstonia solanacearum
15608764   9 DAAVPRRVLIAED----EALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDgIDAASEIASKr 84  Mycobacterium tuber...
16264442   1 --------------------------------------MIHEVHGVARVIETLRPDVIVIDIENPNRD-MMEHLFQLTRt 41  Sinorhizobium meliloti
1QO0_E    78 PRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISEEMAKLKQKTEQLQDRIAGQARINQAKVLLM 157 Pseudomonas aeruginosa
15891055  85 VGRPIAMFVDRSDTASIEAAVEAGVSAYVVDGLKKERVKPILDMAVSRFNAFSRLQRELADAKSALEERKVIERAKGILM 164 Agrobacterium tumef...
16119760  77 PAPTMLAIVGYENPSTLQIVLESGALAIVERPIKPFGLLTNLAIARSLWLERQKLVKEARKYKRKVLGDQKLARAKAILM 156 Agrobacterium tumef...
16124866 118 -GHPVVMFVDRSEPGLAEQAVRAGVAAYVVDGLAPGRVRPILDVAMSRFALTQQLRGDLAKAKADLEARKTVERAKGLLM 196 Caulobacter crescen...
15827661  85 IAP-IVVLTAFSQRDLVERARDAGAMAYLVKPFTISDLIPAIALAMSRFSELTALEREVATLADRLETRKLVERAKGLLQ 163 Mycobacterium leprae
15841081  88 IAP-IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEVATLSERLETRKLVERAKGLLQ 166 Mycobacterium tuber...
15596982  72 QPRPIVMFTDEHDPGVMRRAIQSGVSAYIVEGIQASRLQPILDVAMARFESDQALRAQLQAREAQLAERKRIELAKGLLM 151 Pseudomonas aerugin...
17545101  78 APRPIVLFTDNDDASRIKAAFAAGITAYIVDGLKPTRVKAVLDVAYARFEHERALRAELDNAKTQLAERKVLERAKGLLM 157 Ralstonia solanacearum
15608764  85 IAP-IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEVATLSERLETRKLVERAKGLLQ 163 Mycobacterium tuber...
16264442  42 VGRPIAMFVDRSDTASIEAAVEAGVSAYIVDGLKKERVKPILDMAVSRFKAFSRLQRELAEAKSALEERKLVERAKGILM 121 Sinorhizobium meliloti
1QO0_E   158 QRHGWDEREAHQHLSREAMKRREPILKIAQELLGNEPSA 196 Pseudomonas aeruginosa
15891055 165 KMRGLSEEEAFALLRQTAMNEKKKISEIAQSVVTAAGLL 203 Agrobacterium tumefaciens str. C58 (Cereon)
16119760 157 ANRGTSENEAYREMREQAMARRVPIDEIANSIISAEQLL 195 Agrobacterium tumefaciens str. C58 (Cereon)
16124866 197 KERGLDEDGAYRLLRKLAMDRGKPIGAVAADLLAFAGVL 235 Caulobacter crescentus CB15
15827661 164 VKQGMTEPEAFKWIQRAAMDRRTTMKRVAEVVLETLDTP 202 Mycobacterium leprae
15841081 167 TKHGMTEPDAFKWIQRAAMDRRTTMKRVAEVVLETLGTP 205 Mycobacterium tuberculosis CDC1551
15596982 152 KMKHCGEEEAYTLMRRQAMSRQQRLIQVAEQIIAMHDML 190 Pseudomonas aeruginosa PA01
17545101 158 QQMQLSEDEAFKRLRKMAMDRNIKLVEAAQRVIDVMAG- 195 Ralstonia solanacearum
15608764 164 TKHGMTEPDAFKWIQRAAMDRRTTMKRVAEVVLETLGTP 202 Mycobacterium tuberculosis H37Rv
16264442 122 KMRGLSEDEAFALLRQTAMNEKKKISEIAQSVVTAAGLL 160 Sinorhizobium meliloti
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