Conserved Protein Domain Family
VAR1

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pfam05316: VAR1 (this model, PSSM-Id:283074 is obsolete and has been replaced by 461621)
Mitochondrial ribosomal protein (VAR1)
This family consists of the yeast mitochondrial ribosomal proteins VAR1. Mitochondria possess their own ribosomes responsible for the synthesis of a small number of proteins encoded by the mitochondrial genome. In yeast the two ribosomal RNAs and a single ribosomal protein, VAR1, are products of mitochondrial genes, and the remaining approximately 80 ribosomal proteins are encoded in the nucleus. VAR1 along with 15S rRNA are necessary for the formation of mature 37S subunits.
Statistics
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PSSM-Id: 283074
Aligned: 5 rows
Threshold Bit Score: 177.404
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6DN56  28 IKELLLLLNNKRLNR---SLNKTyiWDYLNELS----------NKGVKLQHLNNINSWSSQIYKFNKTEEINNTIYDRLV 94  Kluyveromyces lactis ...
Q5K457  30 LKNILLELNKNRLNK---GLNNKevNKYMNELN----------NKGNKLQHLNTMNIWSTQIYNYNKNLEINTTILDKLV 96  Lachancea thermotolerans
P21358  21 LKNLLLLMNKNRLMN---KLSNN--NKYLSELN----------NKGNSLQHLNNMNNWKLQNYNYNKNNTINNYINSKLI 85  [Candida] glabrata CB...
P02381  38 LKNMLLDMNNKKMNNmkrMLNNN--NMNPAGANpvvhrigpagNINNKLQHLNNMNNWNTQIYNYNKNMEIMNTMNDKLI 115 Saccharomyces cerevis...
Q75G41  18 LKLILMMITMKRLNN----MNQH--NIYKNRYY----------NKNNNLQYLNKLNTYNNKMYYFNKQLMNNMLIIDNTF 81  Eremothecium gossypii...
Q6DN56  95 TKLLTKLLVLNI----NNKIYKLIISKPIFEHSINKVNIKFfYYLSYKNInkninnNNNLINNIySNYKFNINSKLINLL 170 Kluyveromyces lactis ...
Q5K457  97 TKLLYKLTTLKLlknnNVILKNILISKPIFEHTTNRVNIKFyYYYKSSGI------NNTNLNKI-NNYYLSIISKLMNLL 169 Lachancea thermotolerans
P21358  86 NKLLYKLMSLK--------NNKIIISKPLYKINMNVINIRF-YYYN---M------NNYNYNN--NIYYINMINKLMNRL 145 [Candida] glabrata CB...
P02381 116 NKLLYKMMTLKLn---NMNINKIIMSKTINQHSLNKLNIKF-YYYN-NDI------NNNNNNNN-NNYYMNMMNKLMNIM 183 Saccharomyces cerevis...
Q75G41  82 NNLLKKMMM----------SNNILMTNLKFEHRTNSIHIKY-YFYNYMNI------NNDELSKLyNNYMMSINNQMINLL 144 Eremothecium gossypii...
Q6DN56 171 NNNI-NSISNILSLYYNKDVSFEPIQLKYNYMNSDILAKSLKiMNSSS--KRSLSMNRIKNLMNNMPKLNDKLISQTYIN 247 Kluyveromyces lactis ...
Q5K457 170 NNDN-NNLSKILSYYYNKKITIEPIKLSYTYLNSDIFSQSIN-KDVNKy-NNGIKGQYSRLLNSNIPNLNDQIIAKNYIN 246 Lachancea thermotolerans
P21358 146 NINM-NNLSNILSYYYNKKVIIEPIKLKYLYNNNEIMTKYISlLDNNKy-NNGLLMEYQRTLNNIMPKLNDHNISMNYIN 223 [Candida] glabrata CB...
P02381 184 NNNMnNNLCNILSYYYKKKVTIEPIKLSYIYLNSDIFSKYISlNDMDKy-NNGILTNYQRMLNNIMPKLNDHNISMNYIN 262 Saccharomyces cerevis...
Q75G41 145 NNDN-NSLNNLMTKYYNKKVYINTYKLNYMYLDTELLSQTLT----NIynNNGLSLKSLKMIINKLPFNNDMLLSKNYVN 219 Eremothecium gossypii...
Q6DN56 248 NINNIMFNKYN-NIIKSINNNNnnnp---adssPGNPRGGAagklyNIIYENNNINT------IPNNILMFKYLVGWSIQ 317 Kluyveromyces lactis ...
Q5K457 247 NINNINNIKYN-NIINNLNNSS-----------THYIKSGV-----SNIYNSLNINN------IPMNILMFKYLTGWSIT 303 Lachancea thermotolerans
P21358 224 NINNINKLKYN-NI--LLNNNN-----------------NI-----NNIYNNININN-------NMNLLMFKYLIGWSIM 271 [Candida] glabrata CB...
P02381 263 NINNINNNKYN-NMINLLNNNNninnnnnynnnNNNYIGNI-----NNIYNNMTIDN------IPMDILMYKYLVGWSIK 330 Saccharomyces cerevis...
Q75G41 220 KMN-----KYNlTINNNLNNNK------------------------KDLINLYTLDNklldlsITNNMLLGKYLVGSNIQ 270 Eremothecium gossypii...
Q6DN56 318 LKGRLSnNKSISRSNTMNILNGTFQNYKYIWGNqMVNNYKLNYIPVNHNITNISDVNKNGKYNIKVKLNTI 388 Kluyveromyces lactis NRRL Y-1140
Q5K457 304 LNGRLAsSKAISRTNTYRVLVGTFRNKKYLWGH-INNNYKLNYIPANHNISNLSNVNKNGKYNIKVKLNFI 373 Lachancea thermotolerans
P21358 272 LKGRL--NKNISRISTTYLNNGTFNNKKYLWGN-LNNNFKLNYINSNNNIYNYNNINKNGKYNIKVKLNYI 339 [Candida] glabrata CBS 138
P02381 331 FKGRL--SNNNGRTSTTNLLNGTFNNKKYLWSN-INNNYKLNYIPSNHNLYNNSNINKNGKYNIKVKLNFI 398 Saccharomyces cerevisiae S288C
Q75G41 271 LKGRTL-NRNITRTMKMNIMKGTFNNYMYQWSK-LNNLYKLNYMSTNINKTNNTFINKNGMFNIKIKLNTI 339 Eremothecium gossypii ATCC 10895
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