4DYO,2IJZ,3VAR,4EME,4OIW,4R8F,5JM6,5JM9,4NJQ


Conserved Protein Domain Family
M18_DAP

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cd05658: M18_DAP 
Click on image for an interactive view with Cn3D
M18 peptidase aspartyl aminopeptidase
Peptidase M18 family, aspartyl aminopeptidase (DAP; EC 3.4.11.21) subfamily, is widely distributed in bacteria and eukaryotes. DAP cleaves only unblocked N-terminal acidic amino-acid residues. It is a cytosolic enzyme and is highly conserved; for example, the human enzyme has 51% identity to an aspartyl aminopeptidase-like protein in Arabidopsis thaliana. The mammalian DAP is highly selective for hydrolysis of N-terminal aspartate or glutamate residues from peptides. Unlike glutamyl aminopeptidase (M42), DAP does not cleave simple aminoaryl-arylamide substrates. Although there is lack of understanding of the function of this enzyme, it is thought to act in concert with other aminopeptidases to facilitate protein turnover because of their restricted specificities for the N-terminal aspartic and glutamic acid, which cannot be cleaved by any other aminopeptidases. The mammalian aspartyl aminopeptidase is possibly contributing to the catabolism of peptides, including those produced by the proteasome. It may also trim the N-terminus of peptides that are intended for the MHC class I system. In humans, DAP has been implicated in the specific function of converting angiotensin II to the vasoactive angiotensin III within the brain. Saccharomyces cerevisiae aminopeptidase I (Ape1) is involved in protein degradation in vacuoles (the yeast lysosomes) where it is transported by the unique cytoplasm-to-vacuole targeting (Cvt) pathway under vegetative growth conditions and by the autophagy pathway during starvation. Its N-terminal propeptide region, which mediates higher-order complex formation, serves as a scaffolding cargo critical for the assembly of the Cvt vesicle for vacuolar delivery. Pseudomonas aeruginosa aminopeptidase (PaAP) shows that its activity is dependent on Co2+ rather than Zn2+, and is thus a cocatalytic cobalt peptidase rather than a zinc-dependent peptidase.
Statistics
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PSSM-Id: 349908
Aligned: 63 rows
Threshold Bit Score: 512.856
Created: 18-Apr-2007
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
metal bindingactive site
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 6 residue positions
Conserved feature residue pattern:H D E E D HClick to see conserved feature residue pattern help
Evidence:
  • Structure:4DYO: Human aspartyl aminopeptidase binds 2 zinc ions; contacts at 4.0A
  • Structure:4NJQ: Pseudomonas aeruginosa M18 aminopeptidase binds 2 cobalt ions; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
4DYO_A        28 AKELLKFVNRSPSPFHAVAECRNRLLQAGFSELKetekWNIKpESKYFMTRNssTIIAFAVGgqyv---------pgnGF 98  human
NP_603672      7 AKHLINFIDESPSNYFACINTKNILNDKGFIELFeteeWKLKkGGKYFVTINdsGIIAFTIGseki---------sksGY 77  Fusobacterium n...
NP_971439      4 AEALMKFIDKSPSVYHAIKNAGEFLEAKGFVHLNredtFELKpQGRYFVTNNgsALIAWQMPksgn---------aenGF 74  Treponema denti...
XP_650466      6 KDFINFLNEASGSPFVACQVVQKRLESAGYVRLKenevWNLElHKKYYLVRDdsSLVAFRTNnan----------atsRI 75  Entamoeba histo...
XP_656618      3 EDFLKFLENCSGSAFNAVEHIKQLFLDNNFQLLKennlWNLEkGKKYFIIRDdaTIFAFAIGgkye---------vgnGF 73  Entamoeba histo...
XP_001010435  11 TGDFLNFVNKGLSPYHVVQESKERLEKVGFTQLHegqnWKLVpGGKYYLIRSnsTLLAFTVGkkfd--------anntGF 82  Tetrahymena the...
EBA39792      57 ANDLIDFIEACPSMFHTAATIMAELDEAGFTYLPenaaWDIEpGGRYYTQRNtsSVVAFKVGedlaatwgedgvagdyHF 136 Collinsella aer...
EDM50000      10 SKELMDFIKDSPTAFHVVKNFSTMLEKAGFIKLNernkWKIEqGGKYYVTRNdsSIIAFQVPdnm----------dfyNF 79  Eubacterium ven...
EDM64449      11 ISELTTFIEHAPTAFHAVAELKEILKQEGFEELKesekWKVKpGKRYYVTRNnsSIIAVKAGkel----------dnySF 80  Dorea longicate...
ADO77132       5 AQELIDFINNSPTAFHATQNLETELSANGFIKLDpsqkWDLKiGEKYFVSRNdsALIAFIPGqdf----------ldhGF 74  Halanaerobium p...
Feature 1             #                                                                          
4DYO_A        99 SLIGAHTDSPCLRVKRRSRRSqv-gfQQVGVETYGGGiwsTWFDRDLTLAGRVIVKcptsgrleQQLVHVErPILRIPHL 177 human
NP_603672     78 KIAASHTDSPGFLIKPSPEINrk-gfNILNTEVYGGPilsTWFDRSLSFSGRVFVEsdnalkpkKYFIKYDkDLFIIPSL 156 Fusobacterium n...
NP_971439     75 RIVGSHSDSPTFRIKPNPEIKvnnhyLKLNTEGYGGVilsTWFDRPLSAAGRVIIKtgdllkpeVKLINFDkNLLTIPSL 154 Treponema denti...
XP_650466     76 FITSSHLDSPFLKLKPNPDVFkn-nlALVSCEVYGGGiwhTWIDRDLGISGRVILAng-----eRHIVSIKePLFRICGL 149 Entamoeba histo...
XP_656618     74 IIAGAHLDSPSLKLKPNPFKEse-elNLVSCETYGGGvwtTWFDRDLGICGRVVVEeeg--qfkSIPIVIKePLYRIATC 150 Entamoeba histo...
XP_001010435  83 KIIGAHTDSPCLRLAPLSQATnq-nfRQTCVCTYGGGlwhTWFDRDLVLAGRVVYKtaeg-efkTTLYNSErPILKIPNL 160 Tetrahymena the...
EBA39792     137 QLTASHSDSPTFKVKAVPELDgagetLRLNTEAYGGMidyTWFDRPLALAGRVLVRegd--rieSRLLTTErEVAIIPSL 214 Collinsella aer...
EDM50000      80 QIAAAHSDSPAFKIKENPEMVednnyVTLNVEKYGGMlmaPWLDRPLSVAGRVIVKdgn--tlkPVLLNVDrNLCLIPNL 157 Eubacterium ven...
EDM64449      81 HVTASHSDSPAFKLKENAEIEvakkyTVLNTEGYGGMicqTWFDRPLSLAGRVMVKnge--rieTRLVKVDrDLLMIPSL 158 Dorea longicate...
ADO77132      75 RIISAHTDSPALKIKPDPLIEne-gqLVLNTEIYGGPilnTWYDRELSIAGKIVLKseksfelkEELIDLEkNIAIIPNL 153 Halanaerobium p...
Feature 1                                                                                        
4DYO_A       178 AIHLQRNinen-fgpNTEMHLVPILATAiqeelekgtpe---pgplnavderhHSVLMSLLcahlglspkDIVEMELCLA 253 human
NP_603672    157 CIHQNRGvndg-maiNAQKDTLPLVTITde---------------------neKFSLKKLLakqlkvkedKILSYDLNLY 214 Fusobacterium n...
NP_971439    155 AIHMNREindg-ykfNKQKDTLPLIALInek-------------------leeKGFLMNLIaeeagvtvdKILDFDLYLY 214 Treponema denti...
XP_650466    150 AIHLDTErky---iiDKDKHLSAVCAEAaskn------------------isaYNLLLNKIavqlkvnvkDIISTDLCLC 208 Entamoeba histo...
XP_656618    151 APHLDKRypkg-fviDKETELPAIGLSEke----------------------lLELIQERIgn------kSIITYDLYLC 201 Entamoeba histo...
XP_001010435 161 AIHLTPQdergkfapNTETHLKPVLSSEvyeklsntvvsqdavqnaplknnhyAGLLLDISkktg-ipvdNIIDLDLCFA 239 Tetrahymena the...
EBA39792     215 AIHMNRGvnes-fapNRAVDLCPLISAGel----------------------kQGDFDALIadeldvepeQILGRDLFLV 271 Collinsella aer...
EDM50000     158 AIHMNRNanng-isyNPQKDMIPLFGEIa-----------------------sKDKFDQIIaneagvaieDIISTDLFLY 213 Eubacterium ven...
EDM64449     159 AIHMDRKvneg-ravNKQIDMLPVLSGSvk----------------------eQGEVRSLVaeelglkdtDIYGMDLFLY 215 Dorea longicate...
ADO77132     154 AIHLNREinqk-akiNKKKGLRALITQTkakennl------------aekdelDFSLNKLItqnteyeltEIVESELYLY 220 Halanaerobium p...
Feature 1                            #                                    ##                     
4DYO_A       254 DTQPAVLGgaYDEFIFAPRLDNLHSCFCALQALIDSCagpgslatephVRMVTLYDNEEVGSESAQGAQSLLTELVLRRI 333 human
NP_603672    215 SREKGCLLgaKGEFISVGRLDNLAALHAGLMSLVDNKdk-------rnTCVVVGYDNEEIGSNSIQGADSPTLKNILERI 287 Fusobacterium n...
NP_971439    215 DRQPGCFIgaNDEFFSVGRIDNLGMACASIDALGDALps-------nfVQVAAIFDNEEVGSRTAQGAGSPFLHDTLQRI 287 Treponema denti...
XP_650466    209 DCEPASFLs-LNKYIVGQGIDNLNGVFTSLQGFLSSEqlnq---nsqqIDMFVAFDNEEVGSTNRRGAQSVFLTNIINRV 284 Entamoeba histo...
XP_656618    202 DIQKPSLLgmNKEFVVGQGLDNLICSYGAIYGMIRSSkdell-eencnILMSCIYDDEEIGSTNRRGANSVMLPNIMKRI 280 Entamoeba histo...
XP_001010435 240 DSQPATVVgiNEEFISSPRLDNLFSSWAALVALTKPEvnqei-enssyINVICLFDHEECGSESFQGAGSTLLLQTIDRV 318 Tetrahymena the...
EBA39792     272 NRQDARIWgwADEFISTPKLDDLACAYTSLQAFLGAEna-------rdISVFCCFDNEEVGSETKQGAMSTFLADALRRI 344 Collinsella aer...
EDM50000     214 NRECGTIWgaDNEFMSAPRLDDVMCAFSCIKALTDNKenn------ksVNVCAIFDNEEVGSTTKQGADSSFLYDVLSRI 287 Eubacterium ven...
EDM64449     216 NRMGAVRWgsNREFIGCPRLDDLQCAFTSMKGFLAAEne-------qnINVYACFDNEEVGSGTKQGAASTFLYDVLWRM 288 Dorea longicate...
ADO77132     221 PSQRAQFLgaEAEYIAARAQDNLSMTHAALKAIKSSKth-------kwTQMTIFYDNEEIGSQTPQGADSPFVSNLIERI 293 Halanaerobium p...
Feature 1                                    #                                                   
4DYO_A       334 Sascq------hptAFEEAIPKSFMISADMAHAVHPNYLdkHEENHRPLfHKGPVIKVNsKQRYASNAVSEALIREVAnk 407 human
NP_603672    288 Snamk-----lsfeEHQQALANSFVISNDAAHSIHPNYLekSDPTNEPKiNAGPVIKMAaNKSYITDGYSKSVIEKIAkd 362 Fusobacterium n...
NP_971439    288 Ivstsk---gnafeELQKALAKSFLISADQAHALHPNYTekNDITNFPLmNKGPAIKVAaSMSYTTDGISAAIFRDICar 364 Treponema denti...
XP_650466    285 Hsilfn---nesiqSIYVAYSKSVVLSIDGAHASHPTVDv-MEKNHPIRlNSGPVLKEHcGQRYMSDGLLRAMVVKAA-- 358 Entamoeba histo...
XP_656618    281 Aycfnde--kgieeRIQIGESKSIVLSTDVGHAAHPNYPdrTDDKHPVYmNHGLVIETNcSQQLLGDSNVFAIISKLGee 358 Entamoeba histo...
XP_001010435 319 FkllsatqanvdvdSLHKTYINSFFVSADMAHSIHPNYPekHKENHRIKiNEGIGLKINhNQRYTTDSVSASLIKSVAsk 398 Tetrahymena the...
EBA39792     345 Sgslg-----fddeSYHRALAASMLVSCDNAHAVHPNHAekCDARNQVVlNGGIVIKEAaNQHYCTDAFSRAVFQAICdd 419 Collinsella aer...
EDM50000     288 Smcmg-----kdseDFIRVCASSFMLSADNAHAVHPNYKekADPTNRPYmNKGIVIKYNaNQKYTTDAISASIFKEICkk 362 Eubacterium ven...
EDM64449     289 Nkalg-----kneeEFHRAVAGSFMLSCDNAHAVHPNYRqkTDATNCVYmNDGIVIKSHaGQKYTSDAVSVAVFRMICek 363 Dorea longicate...
ADO77132     294 Iynlg-----ankeDYYTILEKSFLVSADMAHAVHPNFGeeSAQNNRAFlNQGPVIKYNaNLKYTTHATTAGVLIDLMdk 368 Halanaerobium p...
Feature 1                                                   #                       
4DYO_A       408 VKVPLQDLMVRNDt-pCGTTIGPILASrlGLRVLDLGSPqLAMHSiREMACTTGVLQTLTLFKGFFE 473 human
NP_603672    363 FKIPIQTFVNRSDv-rGGSTIGPIQQSqiRILGIDIGSPlLSMHSvRELGGVDDHYNLYRLISEFFK 428 Fusobacterium nucleatum subs...
NP_971439    365 AKVPCQNFVNRSDm-aGGSTIGPISVSnlNIKSVDIGNPiLGMHSvRELGGTEDQEYITKAFAEFYK 430 Treponema denticola ATCC 35405
XP_650466    359 GDIPTQTFVLKQSi-lGGSTIGPHVASttGITTIDLGNPmLSMHSiREMCGALDVDYMTQLIERSYI 424 Entamoeba histolytica HM-1:IMSS
XP_656618    359 VGVKFQRTVKRQEkggGGSTIGPKIAShtGLNVIDFGIPlLSMHSiREIGGISDVDSMTRLVAEVMK 425 Entamoeba histolytica HM-1:IMSS
XP_001010435 399 AQIPIQEFVVKNDs-pCGSTIGPIVSPntGIKACDIGAPqWGMHSiRETCGVVDSYYYVELMSAFFL 464 Tetrahymena thermophila SB210
EBA39792     420 ADVPTQAFANKSDm-aGGSTLGNLSNMqaSMHAVDVGLPqLAMHSsYETGGVRDVMYAIRALTAFYE 485 Collinsella aerofaciens ATCC...
EDM50000     363 VGVEVQSYVNRSDi-pGGSTLGNISNShvSLNTVDIGLAqLAMHSpYETAGVKDTEYMIKAVKKFYE 428 Eubacterium ventriosum ATCC ...
EDM64449     364 AGVPLQYFANRSDe-aGGSTLGNIAMTqvSMNTVDIGLPqLAMHSaYETAGVKDTEYMVKAVETFYA 429 Dorea longicatena DSM 13814
ADO77132     369 NDISYQIYTNRSDk-kGGSTIGPIAATqlGIKSIDLGNPlLAMHSsRELGGSLDHKQMIKLMKLFLK 434 Halanaerobium praevalens DSM...

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