Conserved Protein Domain Family
SpoIID_LytB

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TIGR02669: SpoIID_LytB 
SpoIID/LytB domain
This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General]
Statistics
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PSSM-Id: 274252
Aligned: 23 rows
Threshold Bit Score: 169.169
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAE07054     124 RAVNALGIEAYLMSVVGSEMPHQWPLAALQAQAVAARTYALQQRSRGGG--WDLKATVSSQVYLGVESETPSTRKAVAST 201 Synechococcus s...
BAD78246     215 IAVNYVDLEQYLVSVVGAEMPASWPIEALKAQAVAARSYAIAHMARPASayFDLGSTTRWQAYNGINSEATRSAQAVQQT 294 Synechococcus e...
BAD80273     124 TAINHVGLESYLYSVVGSEVYASWPTEALKAQAVAARSFVLYRRDRNRdprFDVGNSTTWQVYKGIASEAPTTIAAVNAT 203 Synechococcus e...
BAC90327     117 TAINLVDLEAYLYGVVGAEMVASWPEEALKAQAIAARTYALFHWGRRQnqtHDIGDTVQWQVYRGAQYETESVRRAVEAT 196 Gloeobacter vio...
AAQ00473     128 KVVNYLGIEKYLKSVVGSEMPKDWPIEALKSQAIAARTYALRQLKKTGE--YDLNSNISNQVYLGVEAETNRTQEAVNRT 205 Prochlorococcus...
AAS81542      99 LLVNVLPLEDYLLGVLPAEMPASFPEEALKAQAVLARTFAVRRLNPLAP--YDLCATEACQVYLGLSAETPRHERAVRAT 176 Thermus thermop...
BAD78693     214 TLVNTVTVEDYLSGVVPHEIGAGAPAQAIAAQAILARTYALRNVRRFQVdnYELCADVRCQVYRGWESRLPTVEQAIRQT 293 Synechococcus e...
CAE06574     222 TLVEQVPLERYLEGVVPHEIGAGSPPAALQAQTVLARTWALANSHRFRIdgYHLCSDTQCQVYSDPRQAGSAVRQAITAT 301 Synechococcus s...
CAE20119     218 TLIQKIKFDDYLKGVLPHEIGSNSPLEALKAQAVIARTWALYNSDRFKIdqYHLCITTQCQVYKPHLIEYKNVHKAIEDT 297 Prochlorococcus...
WP_010998286 253 TLVNQVSLETYLRGVVPHEIGTNAPTAAVEAQAILARTYALRNLRRFAIdnYQLCANTHCQVYYGLGGTDTRIDKAIAAT 332 Nostoc sp. PCC ...
CAE07054     202 RSLVLVHGGKLINAVFHSSSGGVTEASGMVW-R-NQLPYLVSVPDHD--QHSPMHRWQERFDLEGLRQRLP--EtggvNA 275 Synechococcus s...
BAD78246     295 AGLLLSYRGGIVESLYAATY------------------------------------------------------------ 314 Synechococcus e...
BAD80273     204 AGQVLTYNNRVIEAVFHASSGGHTENVEDVW-G-KPLPYLRGVQDYD--QNAPVFNWSQSFSVQELSAKLT--GvgriLQ 277 Synechococcus e...
BAC90327     197 AGQVITFQGNLINAMYHSHSGGRTEDIKVYG-E-EDKPYLRTVEDFD--QAAPYWKWQQVIPAVNLRKTFGleAvgelLD 272 Gloeobacter vio...
AAQ00473     206 RSLVLVDKGRLIEAVFHSGSGGETESSYSVW-G-KHRPYLISVRDYD--QDSPNYKWQKHFSQKELQNLFF--DlgglNA 279 Prochlorococcus...
AAS81542     177 EGRVLSYAGQVASALYHADSGGMTAGSEEVF-Q-KALPYLRPRPDPYakGPKSVWQQAVRPEEAARALRALgyAprgdDP 254 Thermus thermop...
BAD78693     294 RGLVLSYNNQLIDAVYSSTTGGITAGFEDAW-LgQQRSYLQPRLDAL---RPLWNLQTKPLNQEANLKAFLqlRegfnET 369 Synechococcus e...
CAE06574     302 QGRLLSWQGKPISAVYHATNGGVMAAGPEAW-AmDAQPYLKAEADGD---AGWQQRHGLPLQQRSAVASLLaqReg-aYG 376 Synechococcus s...
CAE20119     298 SNLIITYKKKPINSFYHGSNGGISARASESW-QiKDYRYLNSMIDGS---NALKKAFRLPIKSGDELNKFLefAdekvYG 373 Prochlorococcus...
WP_010998286 333 RGMVLTYNNELIDALYSSTTGGITASFSDVWnG-EDRPYLRPVVDAP---NSVWDFSKQNLKDERNFQRFItlQqgfnES 408 Nostoc sp. PCC ...
CAE07054     276 VDVLSRTASGRVRQARLQGPRGSLLLSGADlrrrlglkstlvsfemvqatapappeplpalqarpvrgrsrLAQLTAAVA 355 Synechococcus s...
BAD78246         --------------------------------------------------------------------------------     Synechococcus e...
BAD80273     278 TEPLQTTPFGRIRDLRITGDRGSRVVKGDEvrralnlrsslftvsse--------------------------------- 324 Synechococcus e...
BAC90327     273 VKVLERSTSGRILALQFVGSKGSQLLKGTDvrlklglrsnff-------------------------------------- 314 Gloeobacter vio...
AAQ00473     280 IRIVEQSSTQRVKRVKIYGPKGITYLSGKEirsllnlkstlvkfkmi----------pssfipnqndkeffndIKNDAIY 349 Prochlorococcus...
AAS81542     255 PQVLEKSPSGRAWRVRLLG----VEVRGPEaqrll--------------------------------------------- 285 Thermus thermop...
BAD78693     370 GQPR-FRWQRRRSLAEIQAELKAYLRDRRDpraefqqiqsvavsqrsp-----sgrvlevivqsdrgpiviGRDEVRRAF 443 Synechococcus e...
CAE06574     377 SAHPRFRWTRTLTASGIRQALG--ASAAGLngplqldvlergrsgrv--------lalqvagndggapvvlKLDRIRRTI 446 Synechococcus s...
CAE20119     374 RKHSLFRWEKIISNEMIQNNLLNNQSIKEKsdlvdlniidrgfsgrv--------tkleiklknlkkpivlVKDDIRRIL 445 Prochlorococcus...
WP_010998286 409 SWDV-FRWYKETPLNEIVKDLQKFLRAKNSpyakfqtiqamaitnrsk-----sgrilelavktdigiftlHKDEVRSAF 482 Nostoc sp. PCC ...
CAE07054     356 SPRPSllgGHGRQRRHVVPGMQLLVTGQGHGHGVGMSQWGANGLARQGADFRTILSHYYRGADVMP 421 Synechococcus sp. WH 8102
BAD78246     315 ---------------------EIVAEAHGH-LGASMSQHGARDLAEQGFDFTRILGNYYRGAQLAR 358 Synechococcus elongatus PCC 6301
BAD80273     325 --assnwfdflrpnpapqPPSQFTIIGRGYGHGLGLSQWGAYGLASQGVDYRRILSHFYQNTNLSP 388 Synechococcus elongatus PCC 6301
BAC90327     315 -------eitpvggagngPVTALTFDGRGFGHGLGMSQWGARALATLGWNCSRILKHYYQGVTLQK 373 Gloeobacter violaceus PCC 7421
AAQ00473     350 RKNSTsiiNNLLQLPNVTYGDSLLVNGNGSGHAVGMSQWGAKYLAERGAKYREILRHFYKGTKIIS 415 Prochlorococcus marinus subsp...
AAS81542     286 ----rlmgLPSAMAEFQG----WLALGRGAGHGVGLSQWGAKGMAERGYGYREILGYYFPGTLLSP 343 Thermus thermophilus HB27
BAD78693     444 AGLFStlfYLEPEQDGQGRPVAYRFVGGGFGHGVGLSQTGAMGLARQGWNYDRILKFYYPQTQLEP 509 Synechococcus elongatus PCC 6301
CAE06574     447 RRLPStlfVIEPQGD-----QRWLVRGGGFGHGAGLSQSGAIDLAWRGWSTERILAHYYPGTVYGP 507 Synechococcus sp. WH 8102
CAE20119     446 SFLPSnlfTINKLND-----NLWLFKGGGFGHGVGLSQSGAIEMAELGFTYEQILNHYYKGTKIKK 506 Prochlorococcus marinus subsp...
WP_010998286 483 AAPRStlfYIVPLNKGKEELWGYAFIGGGLGHGVGLSQTGAQTLAKLGWSSNKILQFYYPGTQLQS 548 Nostoc sp. PCC 7120
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