4ZOW,2GFP,4ZP0


Conserved Protein Domain Family
MFS_MdfA_MDR_like

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cd17320: MFS_MdfA_MDR_like 
Click on image for an interactive view with Cn3D
Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.
Statistics
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PSSM-Id: 340878
Aligned: 55 rows
Threshold Bit Score: 211.666
Created: 28-Jul-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding pocket [chemical binding site]
Evidence:
  • Structure:4ZP0; Escherichia coli MdfA binds deoxycholate; contacts at 5A
  • Structure:4ZOW; Escherichia coli MdfA binds chloramphenicol; contacts at 5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ##  ##                       #  ##                                    
4ZOW_A     10 PLCLVLYEFSTYIGNDMIQPGMLAVVeqyqAGIDWVPTSMTAYLAGGMFLQWLLGPLSDRigRRPVMLAGVVWFIVTCLA 89  Escherichia coli K-12
4ZP0_A     11 PLCLVLYEFSTYIGNDMIQPGMLAVVeqyqAGIDWVPTSMTAYLAGGMFLQWLLGPLSDRigRRPVMLAGVVWFIVTCLA 90  Escherichia coli K-12
Q68WD6      9 VWMLLSLFILSPTTETIYTSGLPSLTkyfsIDGCITQITSTLYFLGFAVGILSLGRLSDIygRRPIVLLGLFIYIVSSII 88  Rickettsia typhi
NP_719034   7 LWLAVLLMMFPQIMETIYSPALPDIAehfaVPISAAAQTLSVYFVAFAIGVFCWGRLADVigRRKAMLAGLVCYAIGSAF 86  Shewanella oneidensis
NP_249799   9 LLLVLALLALPQVAETILSPALPALAshwrLDDATSQWTMALFFVGFAPGIWLWGWLADRlgRRPALLGGLGLAALATFG 88  Pseudomonas
NP_466299  12 LALLVCLVGFPQISETIYTPSLTEIAkgygVSLNLAQMTLSIYFLAFAVGVFFWGVSSDFlgRRKAMNFGIFIYILGCFA 91  Listeria monocytog...
NP_815622  11 LLIIILLVGFPQISESIFTPILPALSsafnIHDSVAQLTMSIYFVAFAVGVLFWGILSDTigRRPAMLLGILCYLIGNIG 90  Bacilli
NP_355603   7 AILGALLTALAPISMAIYTPAMPELTrvfaTNESAIKLSLSLYFAGFALAQLLAGPASDAfgRRRASLVFLSVFLGGGLL 86  Agrobacterium tume...
YP_169481  10 ILTLGLLAMLPPFAVNTYAPAIPNIAehfgIHPNDVIFTFTTYFIGFSIGMLFWGSFSDKfgRKLSLILGMFLYAASTLL 89  Francisella tulare...
NP_232665   7 LWLMVIMLMFPQIVETIYSPVLGSIArsfsVSDAQAAQTLSVYFLAFALGVVIWGVLADKwgRRPTMLVGLLIYGSATFI 86  Vibrio cholerae
Feature 1                         #                              #  ##                        
4ZOW_A     90 ILlaqnieqFTLLRFLQGISLCFIGAVGYAAIResfeeavcikitalMANVALIAPLLGPLVGAAWi-hVLPWEGMFVLF 168 Escherichia coli K-12
4ZP0_A     91 ILlaqnieqFTLLRFLQGISLCFIGAVGYAAIResfeeavcikitalMANVALIAPLLGPLVGAAWi-hVLPWEGMFVLF 169 Escherichia coli K-12
Q68WD6     89 SIfsvniemLMIARFIQAFGVSVGSVIGQSMARdsyqgaelsyvyaiLSPWLLFIPSLGSYIGGYIi-eYSSWHYVFVFF 167 Rickettsia typhi
NP_719034  87 ALlvsdfslLLMARVLSAFGAAVGSVITQTMMRdsysgeelakvfsvMGMSFGISPVIGLLLGSVLs-aFWGYQGVFVVL 165 Shewanella oneidensis
NP_249799  89 AWastdysyLLACRLVQGLGLATCSVTVQASLRdvlqgpalmsyfvtLGAVLAWSPAVGPLGGQWLa-dLGGHPAVFATL 167 Pseudomonas
NP_466299  92 CLfsnnitmLFIGRFVQAFGASTGSVTTQTILRdnyhgndrhhlfakISAALAFSPAIGPLIGGFIg-qYYGFRVVFLFL 170 Listeria monocytog...
NP_815622  91 LFlsptfpwLLFFRLIQAFGASVGSVITQSMMResfndlqrgkifaqTSAALSLSPAIGPLVGGLVq-tYFGYQHVFSTL 169 Bacilli
NP_355603  87 AIfaptievLLLARLIQGIGASVGMTVARAIVRdqftgaeassimnlIGIMLAVGPALGPTIGGLSl-aAFGWKSVFFLM 165 Agrobacterium tume...
YP_169481  90 CAhsqsfsqLAVFRLIQGLTDSSGTVIALAIARdcysgkkltniistLAIIMLISPIISPMIGTRLivsTQSWKSSFYFL 169 Francisella tulare...
NP_232665  87 AMqtdsftiLMLARVFSAFGIAVGSVVTQTILRdvfsghelrkvfslMGIGISISPVLGMLLGGQLa-fAGGHQLVFLAL 165 Vibrio cholerae
Feature 1                                                               #  #                  
4ZOW_A    169 AALAAISFFGLQRAMPEtatrigeklslkelgrdykLVLKNGRFVAGALALGFVSLPLLAWIAQSPiii-----itGEQL 243 Escherichia coli K-12
4ZP0_A    170 AALAAISFFGLQRAMPEtatrigeklslkelgrdykLVLKNGRFVAGALALGFVSLPLLAWIAQSPiii-----itGEQL 244 Escherichia coli K-12
Q68WD6    168 SLIGTILLALYYKILPEtnyyidfsq-sskyfevfnIIIKDKILWLYAFIIGAFNGIYYGFFIEAPfilidkmkvlPSFY 246 Rickettsia typhi
NP_719034 166 MSSAIVLLFLSVKSLPEtkpahtqt---iaigelaiKMLSDRGIIKNTLLVAAFNLMWFSYFSLAPfm------feAQGL 236 Shewanella oneidensis
NP_249799 168 AVLLASLAALVVPAWPEtrpllagtp-epatlaifrRVLADRPLQTRALLVAVLNVLVFSFYAAGPf--------mVGDL 238 Pseudomonas
NP_466299 171 VVMGMILLFWSLKRLPEtktvnatsfsvqkivvigkKMIFDRYTIAFGALIGIFNGILFSYYSEAPtif-----ieRFHL 245 Listeria monocytog...
NP_815622 170 IVMAVLLLFYSFYRLPEtfhlgntlt-kapfwsvakRLSFDSKVWCYGLLIGGINGLLFSYYAEAPfif-----inHFGF 243 Bacilli
NP_355603 166 AGLGAAAIFSVVIFLREttvpdkslirprrllsaygNLLTEPRFLLAALVLGGSIGALYAQATMLTfil-----inTVGM 240 Agrobacterium tume...
YP_169481 170 FGFGIVLVILCSKLPEThakeqreks-ikklfiayfYHLRNLPFTIYTICSGLLFAAFFSYIGASSiiy-----lnVYDT 243 Francisella tulare...
NP_232665 166 FFIALVLFVYNLCQLPEtqqvkpki----algclvaRMFKDRQVLLSALLVALYNVALFSYYQLGAfi------fsDLGL 235 Vibrio cholerae
Feature 1                                                                                     
4ZOW_A    244 SSYEYGLLQVPIFGALIAGNLLLARLt-sRRTVRSLIIMGGWPIMIGLLvaaaatv-----isshaylWMTAGLSIYAFG 317 Escherichia coli K-12
4ZP0_A    245 SSYEYGLLQVPIFGALIAGNLLLARLt-sRRTVRSLIIMGGWPIMIGLLvaaaatv-----isshaylWMTAGLSIYAFG 318 Escherichia coli K-12
Q68WD6    247 GKLAFLLSFSAIFGGFLGGYLIKKRQv--HDKKVMSIGFIFSLCGCILFvvnafilefilvsnglaisMIFVPMMIHIIG 324 Rickettsia typhi
NP_719034 237 STLIFGMSGLLLGFGAFLGSYFNQVLlgrCCTSPRLIRLASSIALVGGVgiwllqst----figlnnvYFLAPMLLIVIA 312 Shewanella oneidensis
NP_249799 239 PGLGFGWIGLAIAIAGSLGALLNRRLp-rTWNSARRVRLGLALAAAGATaqtllaa-----vgyaeglYWALPALPIFIG 312 Pseudomonas
NP_466299 246 NQSQYGFMGCAVAMATILGAWLSNWRl-mQNSPHKIIKEGILLAIIGTLalsvvaif----pltnqviLYILFISIILAG 320 Listeria monocytog...
NP_815622 244 SSVQYGFLGLVLAVSSILAAVLINWLl-gYWSAEKIAFAGLLLSIFAACcllimt-------qfetiiGLILFIFLFFLG 315 Bacilli
NP_355603 241 TPTAFGIGMLMQTGAYFFGSIALRYIa-pRLGDRRSVMLGLCFSGTGGLlillsvf-----lippsffSIMGPVAVATVG 314 Agrobacterium tume...
YP_169481 244 GYTLYMLYFALTTIGVILANLTLKQLs-eSVELEVFTRLGLGISLLSVFvmiiysh-----tqfkhgyIFMLLMLITCYG 317 Francisella tulare...
NP_232665 236 DAEQFGYSGIALGLGSLIGSFLNKTLlakQVPQRALLLLAALLLIMGTIgvslt----------ldsiGFVAAMILVVIA 305 Vibrio cholerae
Feature 1                                    #                                         
4ZOW_A    318 IGLANAGLVRLTLFasdmskGTVSAAMGMLQMLIFTVGIEISKhaw-lngGNGLFNLFNLVNGILWLSLMVIF 389 Escherichia coli K-12
4ZP0_A    319 IGLANAGLVRLTLFasdmskGTVSAAMGMLQMLIFTVGIEISKhaw-lngGNGLFNLFNLVNGILWLSLMVIF 390 Escherichia coli K-12
Q68WD6    325 HSLLIPITLRYALEdyakvtGTAGSIFGAIYYIVIAAVTYCVSkih--geTISNFSLLCLVSSISSVISFYYI 395 Rickettsia typhi
NP_719034 313 YGIAIPNILSSALAgyrtyaGSAGALFGLFYYILLGAGLGVVGli---nhLGGVITLAALFCTVLSMSRARGE 382 Shewanella oneidensis
NP_249799 313 FGVAIPNLLGPALHayddcrGRAGALFGLAYYLLIGLGLGASTllp--fdRPWPLAAYWSLLGLVALLLARRL 383 Pseudomonas
NP_466299 321 IGMALPNCLSLALVkfqeaaGTASAFLSLGYYVIVSLCTFFIGvlh--sgSMLVFPSFCLVLLLIALLCIKIA 391 Listeria monocytogenes
NP_815622 316 INITLPNALSMALKgyesviGTASGIFSFVYYLFVSFFTYLISyfhngtiWVLPLYFLSFACLLAFSYYVIVY 388 Bacilli
NP_355603 315 IALLTPSMVTAALApfphiaGSASAMMGFIQMGSGFAGGTAASli---gsPLTGFGIVIPVMEFTAVASYIGF 384 Agrobacterium tumefaciens...
YP_169481 318 LSLSSTSLLSQSLQlisnhfGAATAVNNFFKFSLAGFANFVMSfsv-gsmLVSNLPLQQLTIILITIILLCIT 389 Francisella tularensis
NP_232665 306 YGMAIPNILSTALVeyksqaGSAGALFGLLYYLLIGSGLALTGlvq-rlgVVLLMCAGITLLATLARSSHIAR 377 Vibrio cholerae

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