Conserved Protein Domain Family
RNase_Y

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TIGR03319: RNase_Y 
ribonuclease Y
Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch. [Transcription, Degradation of RNA]
Statistics
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PSSM-Id: 188306
Aligned: 29 rows
Threshold Bit Score: 687.815
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012972580   3 LAIAVFAVIIGLVIGYVSisakmkssqeaaelmllnAEQEATNLRGQAEREADLLVNEAKRESKSLKKEALLEAKEEARK 82  Streptococcus m...
WP_011416644   8 aFIMLGLIAIGLAIGYFL------------------KFRLSQKRLESSENLALRIIDEAKKEAETIKKEAVLQTKENLLK 69  Syntrophus acid...
WP_004513446   7 IVLILAAAGLGYFVGNML------------------RKRISDTLVSKAEELASKIVDDAKREAETITKEAELKAKDEVFQ 68  Geobacter metal...
WP_011342111   7 WIGIGAAFLVGAIGGALV------------------RRKVAATQLAEAKRMADQILSEATKEADILRKEAEIQKKDALLE 68  Pelobacter carb...
WP_010939940   6 FAYIAIGAVLGAGTGYLL------------------HRYVSAKRIGDANELAKRIVEEARKEAQAQKKEILLQGQDEIFN 67  Desulfovibrio v...
WP_011190111   8 FVYLGLDLIVGCLIGFFL------------------RKQLVERQQQNIQAQSKQIIENAIIDAEQLKKEALLQSKEEVYQ 69  Desulfotalea ps...
WP_011526885   6 VLCTVSSLFVGGGTGIFL------------------YKKVSKKYIGDAKELAIRIVEEARKEGQAQKKEILLQGQNEIFN 67  Lawsonia intrac...
WP_010882462   9 VVLVTVGLTFGWTIRWLY------------------ARFH----LSACEQRAERILQEAQKEAESKKKSILLEAKEYVLR 66  Treponema pallidum
WP_002681149   7 VILPAVCIILGWTIRWLY------------------ARF----QLSASEQRAERILQEAIKDAEAQKKEFLLEAKEQLIR 64  Treponema denti...
WP_007325643   9 ILYCLFFFFLGIAAVLAF------------------IQRQAVKRRERLDAEAEAVLESARREAETRGNQIIVDAREKALA 70  Rhodopirellula ...
WP_012972580  83 YREEVDAEFKSERQELKQIESRLTERATSLDRKDDNLTSKEQTLEQKEQSISDRAKNLDAREEQLEEVERQKEAELERIG 162 Streptococcus m...
WP_011416644  70 LKAEFEKETRERKLDLDNLERRIRSKEENLDKRIDSMSQKENAIEVREKNLLSKEMQLNEKHDKLSRMIGEQKEKLEQIA 149 Syntrophus acid...
WP_004513446  69 AKAEAERDAKEKRKDLQALEKRLQQKEENLDKKMNLFDQRDADLTKKDQALLNREQGLVQKEERLDGLIAEQREKLESIS 148 Geobacter metal...
WP_011342111  69 AKTAWEQEAREMRRELQAQEKRLVQREENLDRKVAQVDARDEEFGQREKRLSQQESRIRSWEKEADALVRQQRERLEELA 148 Pelobacter carb...
WP_010939940  68 QKRELENEFKERERELKARDRKLEEQGERLEEKLEKATQKEHEVLAIEKELTRKERRLATLEEELEGKIAEQDHRLEEVS 147 Desulfovibrio v...
WP_011190111  70 IKQSLEAEVKLERDDLKDEHRQLKKQRDNIKRENERFEKRQSRHVVAEKALERRLREVDVKHEEADNEILKQRDELARIA 149 Desulfotalea ps...
WP_011526885  68 QKKEFEFDFKQREKELSIKDKKLQVQSERLEERLERAAEKEHEILKVEKELSIKERNLLTLEEQLKSRIDEQEKQLQKIS 147 Lawsonia intrac...
WP_010882462  67 ERNQQERDDRDRRAELQRAERRLLQKEEALSTRA--------------GELDSRERSLKQRDQSLCQEEARYRQELERVS 132 Treponema pallidum
WP_002681149  65 EQKQQERENRERRSDLQRFERRLAQKEEVLDKRV-------ETVEKQEKELIKREAALDERTEILSGEEERYREELERIS 137 Treponema denti...
WP_007325643  71 IKAEADREVAAMRETEQIRDRKLDAREDQLASGQESLRKAQRGLESSQTRLAAQMRNLTEQRAELDRLVQESQRALEKVS 150 Rhodopirellula ...
WP_012972580 163 ALSQAEARDIILAQTEENLTKEIASRIREAEQEVKERSDKMAKDILVQAMQRIAGEYVAESTNSTVHLPDDTMKGRIIGR 242 Streptococcus m...
WP_011416644 150 DITSEEAKDFLIRSMEAAAKRDAAMLIRKIEEDAKREADKKSREIIAYAVQRYAGDYVAENTVSVVNLPNDEMKGRIIGR 229 Syntrophus acid...
WP_004513446 149 GLSSTEAKKILMDAMESEAKLDAAKRIKVIEEEARETADKKSKEIMALAIQRYAGEYVAERSVSVVALPSDEMKGRIIGR 228 Geobacter metal...
WP_011342111 149 GLGAEEAKAQLMEQMESEARHECAKKIKQIEDEAKEAADKKAQEILALAVQRYAGDFVAESAVSVVPLPNDEMKGRIIGR 228 Pelobacter carb...
WP_010939940 148 GLTAEEARARIMEEVEARTRHESAKMIRVIEMEARETADRKAKEILASAIQRYAGDYVGEQTVTAVTLPSEDMKGRIIGR 227 Desulfovibrio v...
WP_011190111 150 GITQDEAKKLLMESIESEAQMDAAKRLSKIENEMKLEADRKARSILALAICRYAGDYVADKTVSMVPLPSDEMKGRIIGR 229 Desulfotalea ps...
WP_011526885 148 GLTVEEAKQSLFEEVKNRSRHESAKMMRLIEAEAVETANRKAKEIIANAIQRYAGDYVSEHTVTAVTLPSEDMKGRIIGR 227 Lawsonia intrac...
WP_010882462 133 GLTQNQARDLIIKNLENEAKHDAQALINKIEEDAALNAERRARDILVTTMQRITADVTGDVTVSTVNLPSEEMKGRIIGR 212 Treponema pallidum
WP_002681149 138 GLTQQQAKDLIIRDLEAEAKHDAVTIINKIEQEAQLTAEKKAQDILITTIQRLATETASDITVSTVSLPSDEMKGRIIGR 217 Treponema denti...
WP_007325643 151 GMTQEEAAEKLMQSLRQDLEHEIGSTVLKHQRELGRRVDAQAREMLLTAMQRYASVHTADTTTSTVGVPTDDMKGRIIGR 230 Rhodopirellula ...
WP_012972580 243 EGRNIRTFESLTGVDVIIDDTPEVVTLSGFDPIRREIARMTMEMLLKDGRIHPARIEELVEKNRQEIDNKIREYGEAAAY 322 Streptococcus m...
WP_011416644 230 EGRNIRAIEAATGIDLIVDDTPEAVVLSSFDPIRREVAKISLERLITDGRIHPGRIEDIVKKVRLEVDSIIKETGERVSF 309 Syntrophus acid...
WP_004513446 229 EGRNIRALEAATGIDLIIDDTPEAVILSGFNPVRREVAKIALEKLITDGRIHPGRIEEVVAKAEEEVEQTIKEAGDQAAF 308 Geobacter metal...
WP_011342111 229 EGRNIRAIEAATGIDLIIDDTPEAVIISGFNPVRREVARLALERLIGDGRIHPSRIEEAVNKATQDVDNAIREAGEQATF 308 Pelobacter carb...
WP_010939940 228 EGRNIRALEAATGVDLIIDDTPETVILSAYSPLRRQVAKMALERLIQDGRIHPARIEDIVRKCEQELEVQVREVGEQATF 307 Desulfovibrio v...
WP_011190111 230 EGRNIRAIEAATGIDIIIDDTPEAVILSGFNPVRREVARLALIQLISDGRIHPGRIEEVVEKVSKELDEVMCEAGEQATF 309 Desulfotalea ps...
WP_011526885 228 EGRNIRALESATGVDFIIDDTPETVVLSAYSPMRRQVAKMALERLIQDGRIHPARIEEIVRKCEEDLAIQVREIGEQATF 307 Lawsonia intrac...
WP_010882462 213 EGRNIRALETLTGADVVVDDTPEAVVISCFDPVRKEIARISLERLVLDGRIHPARIEEIVQKVTQEVSQKIYEEGEKVLF 292 Treponema pallidum
WP_002681149 218 EGRNIRALETLTGVDIIIDDTPEAVVVSCFDPVRKEIARVALERLILDGRIHPARIEEIVQKVTREISQKVYEEGEKVLF 297 Treponema denti...
WP_007325643 231 EGRNIRAFEKATGVDLIIDDTPGVVVVSGFDPVRREVARMSLEKLIADGRIHPSKIEETVEQAGKEIQAFILQKGQEAAG 310 Rhodopirellula ...
WP_012972580 323 EIGAPNLHPDLMKIMGRLQFRTSYGQNVLRHSIEVAKLAGIMASELGENAALARRAGFLHDIGKAIDREVEGSHVEIGME 402 Streptococcus m...
WP_011416644 310 DVGVHDIHPELINLLGSLKYRTSYSQNVLQHSIDVAHLTGMMAAELKMNIKEAKRAGLLHDIGKAVDHKIEGTHAAIGAD 389 Syntrophus acid...
WP_004513446 309 DLGVHGIHPEILKLIGRLKYRTSYSQNVYQHSLEVAFLCGIMASELGINVKQAKRAGLLHDLGKAVDHEVEGSHAVIGAE 388 Geobacter metal...
WP_011342111 309 DVGVHGIHPEIIKLIGRLRYRTSYGQNVLQHSIEVAFLCGIMAAELGINVKQAKRAGLLHDIGKAVDHEVEGSHAVIGAN 388 Pelobacter carb...
WP_010939940 308 DAGVHGIHPDIIKLLGQLRYRTSFSQNVLQHSLEVSALCGMMAAELGMDIKKAKRAGLLHDIGKAVDHEVEGPHALIGAD 387 Desulfovibrio v...
WP_011190111 310 DVGAHGVHVELIKLLGRLRYRTSYGQNVLQHSLEVAFLCGIMAAELGIDVKMAKRAGLLHDIGKAVDHEVEGSHAVIGRD 389 Desulfotalea ps...
WP_011526885 308 DIGVYGIHPELIRILGQLNYRTSYTQNVLRHSIEVASLCGMMAAELGVDIKKAKRAGLLHDIGKAVDHEVEGSHAIIGAE 387 Lawsonia intrac...
WP_010882462 293 DLGIHDMCPEGVRALGRLYFRTSYGQNVLYHSKEVALLASMLASEIGADVAIAKRGALLHDIGKGVETDSDRNHAEIGME 372 Treponema pallidum
WP_002681149 298 DLGIHNMNQEGVRALGRLYFRTSYGQNVLQHSKEVAIIAGMIASEIGANVEIAKRGALLHDIGKGAETDSDKNHAEIGME 377 Treponema denti...
WP_007325643 311 EVNVSGLHDRVIEMLGRLHFRTSYSQNVLRHSVEVAFLAGMMAEMIGLDGDLARRCGLLHDIGKAADHELEGGHPKIGAD 390 Rhodopirellula ...
WP_012972580 403 LARKYKEHPVVVNTIASHHGDV-EAESVIAVIVAAADALSAARPGARSESLESYIKRLHDLEEIANGFEGVQNSFALQAG 481 Streptococcus m...
WP_011416644 390 YAKRFGESQRIVQAIAAHHDDG-RTNTLLGVLVQAADTLSAARPGARREMLETYVKRLEELENIANSFNGVDKCFAIQAG 468 Syntrophus acid...
WP_004513446 389 LARKYGESPKIVHAIMAHHEDE-KPNTVLAVLVQAADALSGARPGARREMMETYVKRLDDLERIATSFVGVNNSFAIQAG 467 Geobacter metal...
WP_011342111 389 LARKYGESAKIVHALAAHHEDE-KPSTVLAVLVQAADALSGARPGARREMLETYVKRLQDLERIGTSFAGVTNCYAIQAG 467 Pelobacter carb...
WP_010939940 388 IAKKYGEGKDIIHAIAAHHEDQ-PPKTALAVLVQAADSISGARPGARKELLENYVKRLEDLENIATGFEGVSKVYAIQAG 466 Desulfovibrio v...
WP_011190111 390 LAKKYGEPDEIVYAIGAHHADQ-PPKSVLDILVQAADALSGARPGARKEMLQSYVKRLEDLEAIANKFPGVDKSYAIQAG 468 Desulfotalea ps...
WP_011526885 388 LAKKFNETEEIVHAIEAHHEEKgKPETALAILVQASDCLSGARPGARLELLESYVKRLEHLENIAGEFEGVSKAYAIQAG 467 Lawsonia intrac...
WP_010882462 373 MARKMNEDPRVVNAVGSHHNDI-EPCCVESWLVQVADAISAARPGARREMVDHYVKRLENLEAIAEGFSGVEKAYAIQAG 451 Treponema pallidum
WP_002681149 378 LAKRINEDPRVVNAVGAHHNDI-EPTCIESVIVQIADAISAARPGARRETMDNYVKRLENLEQLAEGFNGVEKAYAIQAG 456 Treponema denti...
WP_007325643 391 LLRRSKENDEVVHAAKGHHDEI-VTEFPYTMLVATADACSASRPGARRESLERYVKRMEELESIAQRFDGVQQAYAISAG 469 Rhodopirellula ...
WP_012972580 482 REIRIMVNPGQIKDDKVTILAHKVREKIENNLDYPGNIKVTVIRELRAVDYAK 534 Streptococcus mitis
WP_011416644 469 REIRILVGSEKLSDNDAMMLCKDIVKKIESELTYPGQIKVTVIRETRVSDFAK 521 Syntrophus aciditrophicus
WP_004513446 468 REIRVMVSSDEVTDERAVVLAKDIAKKIEAEMTYPGQIKVNVIRETRAIEYAR 520 Geobacter metallireducens
WP_011342111 468 REIRVMVSSEEVSDVQSHTLAKQIARQIEEEMAYPGQIKINVIRETRAVEFAK 520 Pelobacter carbinolicus
WP_010939940 467 REIRVMVNSENVDDDQTYMLCKDIAAKIEKNLTYPGQIRVTVIRERRAVGYAK 519 Desulfovibrio vulgaris
WP_011190111 469 RDLRIIADAQKISDAEATLLSRNIAASIEEKLTYPGQIRVTVIRETRSVEYAK 521 Desulfotalea psychrophila
WP_011526885 468 REVRVMVDADSIGDDQTYLLCKDIAGRIEESLTYPGQIRVTVIREHRAVGYAK 520 Lawsonia intracellularis
WP_010882462 452 RELRVLVNNDKIPDRDVKALGRDIAKKIESDLKYPGRIRVTLIRETRVVEYAR 504 Treponema pallidum
WP_002681149 457 RELRVVINNEKISDADTKILARDIAKKIENDLQYPGRIRVTLIRETRIVEYAR 509 Treponema denticola
WP_007325643 470 RELRVMVGSQQVSDERAAAICRDIASTFEKELTYPGEIKVTVVREARFTNTAK 522 Rhodopirellula baltica
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