5YX6


Conserved Protein Domain Family
CoA_transf_3

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pfam02515: CoA_transf_3 (this model, PSSM-Id:396872 is obsolete and has been replaced by 426810)
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CoA-transferase family III
CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.
Statistics
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PSSM-Id: 396872
Aligned: 53 rows
Threshold Bit Score: 248.667
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5YX6_D        10 LDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAP-GGEAARQITSVLPg-rPPLATYFLPNNRGKKSVTVDLTTEQAKQ 87  Mycobacterium t...
WP_012205349  15 LSGVRVLDLSAYIAGPYGCSLLADQGAEVIKVEPP-VGDNLRKYPSTLE----AESRAFLGVNRSKWGMVLDLKDEADHA 89  Delftia
Q7VS14         6 LAGITVLDFSQGIAGPHGACLLGEMGAEVIKIEPP-AGDWLRGLGHRQG----GTSVLFGYFNRGKAGVALDLKDHAQRR 80  Bordetella pert...
Q0JZY4         6 LDGLTVIDFTQIGAGPTCTMLLADMGARVIKVEPP-GGEMGRGLGPGWL---GDDSALFHGFNRNKLGVALDLKSADGVA 81  Cupriavidus nec...
Q0RV52        15 LDGLKVLDLSMYLPGPYASMLLADLGADVIHVEPP-TGDLVRVIEPSVG----GDSALHHWVGRNKRSCTVDLKSQEGHE 89  Rhodococcus jos...
Q8F1J1         6 LSGIKVIDLSLLLPGPLCSMYLGDMGAEIIKVENPrAMDATRVMFKKAN----GAPSLYLMLNRNKKAITLNLKKEKSRE 81  Leptospira inte...
A0DG77         2 LSQIKVLEFAGLAPTVFIGMVLADYGAQVTILS---RHDSQPQN---------------SPMNRGKKSMTFDLKNKQDIE 63  Paramecium tetr...
A0DKC9         2 YKQLKVLDLSRILVGPYATMLLSDLGAQVIKVESF-EGDETRKWGPPFF---NNQSTYFLSINRSKQSICVDLK--KGSS 75  Paramecium tetr...
WP_004627789   5 LAGLRVLDLSNVLAGPFCGYQLGLLGAEVIKVEVPgNGDLARRLGADPEqarRKMGASFVAVNAGKQSVTVNLKHPEGRA 84  Ralstonia
Q5FLY9        24 LSGILVVDFTHVLSGPTCTRMLADAGARVIHIERK-TGDDTRHMRPYIS---DGSSEYFRICNAGKESVALDLKDPKDHA 99  Lactobacillus a...
5YX6_D        88 QMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTG-M--PTPEG 164 Mycobacterium t...
WP_012205349  90 VLLRLVREADVLVHNFRPGVPERLGIGFAQLAAINPRLIYCSVTGYGSRGPLKAKAGYDQVLQTMTGMCAM-Q--GKAGG 166 Delftia
Q7VS14        81 QALALIDKADVLIESNRPGVMARLGLGYEQARQRNPGLVYISVTGFGQDGPHRDLPATDAAMQAYSGFSFG-A--GDM-R 156 Bordetella pert...
Q0JZY4        82 VARRLIVGADIVVESMRPGVMERLGLGHAQLADEHPALIYCSISAYGQEGPYASRAGVDGIMQADSGLMSL-I--GLPDG 158 Cupriavidus nec...
Q0RV52        90 LFLGLVRDADVVIEGFTPGVAARLGVGYDDCRVVNPDVVYCSISGAGHGHDGSGSPGHDINYLARSGFLDQ-A--TDAAG 166 Rhodococcus jos...
Q8F1J1        82 ILFKLLENADILLEGFRPDGLAKMGYGYDDLKERFPKLIYCGIYGYGTEGKYRNFAGHDVNYLSLSGVLSQ-T--GK--- 155 Leptospira inte...
A0DG77        64 IVKHMIKDSNILIDPYRPGVLERLGLSYKICSEINPKLIYCRVTGFGQNSPLKEKAGHDINFISYGGVLGYcAstGSQKR 143 Paramecium tetr...
A0DKC9        76 FIKQLAQQSDVLVENFTSGVMDRLGLGYDELSKINPRLIYASVNGFG---SNNNQPGFDYIMQAETGFMHI-T--GEKER 149 Paramecium tetr...
WP_004627789  85 ILLKLVAQADALIENYRPGVMDRLELGYDVLREVNPRLVYCAISGFGKDGPLSGRPAYDQIIQGISGVMSV-T--GDDAS 161 Ralstonia
Q5FLY9       100 LAEKMIAKADVVVENFRPGVMKRLGFGPEEMVKKYPKLIFASISGFGQYGPWSKQAAYDTIVQAVSGLMDA-T--GTPKG 176 Lactobacillus a...
5YX6_D       165 KPQIIPFQLVDN-ASGHVLAQA-VLAALLHRER-NGVADVVQVAMYDVAVGLQANQLMMHl-nRAASDQPKpepA----P 236 Mycobacterium t...
WP_012205349 167 PPEILYGSVVDY-YASALVAGG-VSSALYEREK-SGLGQHVGVSLLRAALTMQSARM------VWAEGEPRe--VgrdmR 235 Delftia
Q7VS14       157 DPVRVRVSVVDI-VTGVYVSNA-ALAALMARHGnQGQGQYIDLSLMHGISAVQGAKYAEH---AATRGVISr------eL 225 Bordetella pert...
Q0JZY4       159 EPCKVQAPVVDV-MTGYVASVG-VLAKLAQRAR-DGLGGHLDVNLLNAALALQQSSITSY---CADGQLPEr--VgsaaP 230 Cupriavidus nec...
Q0RV52       167 SPVPIGPPIADV-AAGLHAAVG-ILAALRHRDS-GGGGQFIDVGLMGAALAMTGPQIVKA---LAPKPMPRdr-----dH 235 Rhodococcus jos...
Q8F1J1       156 TPQIPGYQLADI-GGGTMTALSsILAALYAREK-TGKGQKISVSMMDSSLPFLSLYGGIY---GATGKNPE---GgnelL 227 Leptospira inte...
A0DG77       144 P-AIPGNVIGDFaVGGMLGVAS-ILAALINVQK-GGSGQQIDLGMAQGAAYLSQFILHQKnekLWSNGIGNnv----ldG 216 Paramecium tetr...
A0DKC9       150 EPMKVGVAIIDV-LTALNLCNG-IQGALYQRIE-TDRGCHIQTSLYESAIASLVNVSGMY---LNGQKDMHr--MgnqhP 221 Paramecium tetr...
WP_004627789 162 APLRVGYPISDT-VGGITAALA-VTACLLGAQR-TGQGCMVDVSMLESTLATMGWVVSNY---LNAGVTPQp--MgnqnF 233 Ralstonia
Q5FLY9       177 KPTRVGTSVSDV-VAGIMGYSA-IMTALVARDR-TGKGTTVDVSMLDSTFSLMVQDLMLA---LGPHEVPHr--IgnrhP 248 Lactobacillus a...
5YX6_D       237 kakrrkgvgfATQPSDAFRTADG-YIVISAYVPKHWQKLCY-LIGRPDl----VEDQRFAEQRSRsi-nyAELTAELELA 309 Mycobacterium t...
WP_012205349 236 ----------SGGITGIHPTREG-YLYISANTAHFWAALCR-KLDLPEv----ASDERYDSVRKRaq-hrDVLVPLLRQA 298 Delftia
Q7VS14       226 ----------Y-AAIGIYPTRDG-HIALSAMRDQQVTDFIG-LAGRADl----LADPRYATQQARyd-nqDELRALIAAE 287 Bordetella pert...
Q0JZY4       231 ----------YSAPNQAFRTADG-WVMVAAYMPERWRRLCD-VLGRPEl----AGDPRFATSPLRvv-nrAAMVEVLTSA 293 Cupriavidus nec...
Q0RV52       236 nl-------gADPAYRTYRTKDGrHVVIGAFEGKFWIRLCT-LLEREDlislrHSEPDKAASEL-------------AGI 294 Rhodococcus jos...
Q8F1J1       228 s--------gKLPNYNVYQTKEGrWVALGALEDMFFKTFLR-QTGLDKh---lEELPAEEKNFS-------KWKEILTTY 288 Leptospira inte...
A0DG77       217 ----------GTHFYNIYQCKDGkFMSVGCLEEKFYQEFVKgLIAGGLs----QQRGQFILENQlnqaewENLKQEISTL 282 Paramecium tetr...
A0DKC9       222 ----------SISPYGTFKIKNK-YIVIGVAQDNQFQSLCK-ILNLNHl----TSDEQFKENKGRvq-nsEKLKKIIEEA 284 Paramecium tetr...
WP_004627789 234 ----------TAAPSGTFTTGDG-LINIAANEDKQFAALCR-VVGHPEl----ATDARFAERHARke-hrQQLNDALEAA 296 Ralstonia
Q5FLY9       249 ----------DMYPFDTFDCKDQ-PIAICCGNDHLWSLLSH-TLGHDEw----VNQPNFKTNDLRek-nwQKVKNTMQAV 311 Lactobacillus a...
5YX6_D       310 LASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGAd-tITVIRTPARYASFRA-VVTDPP-PTaGEH 386 Mycobacterium t...
WP_012205349 299 LAGRSALEWEALFGEE-VPCAAARTVEDMFDDPQVQAEGMVTRFEHPTlgsYRGFAGAVEFDRTPG-PPAFAA-PTlGQH 375 Delftia
Q7VS14       288 LAKQPTAHWIEAARRIDLICQPVQTYDQFRQDPQVRTYELFQDMDLGYdmpLPAVRMP-GMTATQA--SLRPP-PRlGAD 363 Bordetella pert...
Q0JZY4       294 FVTRATDTWLALLQDADILCAPVATYEDVMAHPQVAANRMVQRVRHDTlgeIRMPGFPINSAQENA-LPSRPA-PAcGQH 371 Cupriavidus nec...
Q0RV52       295 FRTHDLQHWNSLLDDANVCYSPVNRIDEVSRDPLVLARQDFEISEGHAg-lLTSMRNPIRLSATPT-ATRSGA-PGlDEH 371 Rhodococcus jos...
Q8F1J1       289 FSTKTFEDLNVLFENQDSCLTPVKTIEEVIKDPVFQESGMVIEKKHPDygdYFQFGAPFSFSETPV-TYRLDP-PShGEH 366 Leptospira inte...
A0DG77       283 FESKTRDQWEKIFDQFDACVSPVVDLEEY--ETKNYLGENVFVKRNGK---IEVNGQPIFSDY----QFQFKDiPKiGQH 353 Paramecium tetr...
A0DKC9       285 LEIWDVEDLIEVMKKNKIPVGEVKSVGQCLESSHTKQLNMVMELENGE----KAIRNPLSFSNINL-DYPKQA-PYlNEH 358 Paramecium tetr...
WP_004627789 297 LAARPATEWEPLLIDAGVPAGLVLDVPGVLAHEQVTGRGFVTAFPEAG---QHVTRAGFRLSGEDP-CPQTPA-PMlSAH 371 Ralstonia
Q5FLY9       312 LKTKNAAEWDKILHEAGIPAGLVLNVDKTRRLDQIIARGMVKTLPDGN----EVLGSPMKYSTWNSyGLQKDA-PKlNEN 386 Lactobacillus a...
5YX6_D       387 N 387 Mycobacterium tuberculosis H37Rv
WP_012205349 376 T 376 Delftia
Q7VS14       364 T 364 Bordetella pertussis
Q0JZY4       372 T 372 Cupriavidus necator H16
Q0RV52       372 G 372 Rhodococcus jostii RHA1
Q8F1J1       367 N 367 Leptospira interrogans
A0DG77       354 N 354 Paramecium tetraurelia
A0DKC9       359 R 359 Paramecium tetraurelia
WP_004627789 372 T 372 Ralstonia
Q5FLY9       387 G 387 Lactobacillus acidophilus
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