Conserved Protein Domain Family
HSPA13-like_NBD

?
cd10237: HSPA13-like_NBD (this model, PSSM-Id:212679 is obsolete and has been replaced by 466835)
Nucleotide-binding domain of human HSPA13 and similar proteins
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187.
Statistics
?
PSSM-Id: 212679
Aligned: 6 rows
Threshold Bit Score: 699.994
Created: 16-Nov-2006
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
Feature 1:nucleotide binding site [chemical binding site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                  # ####                                                
NP_008879     12 VLTLLLAGYLAQQY-LPLPTPKVIGIDLGTTYCSVGVFFPGTGkVKVIPDENGHISIPSMVSFTd-NDVYVGYESVELAD 89  human
NP_001017223  12 ILALLLAGYLAQQY-LPMPTPRVIGIDLGTTYCSVGVFHPGTGeVRVITDENGHQSIPSIVSFTe-KDVFVGYDGLELAD 89  western clawed ...
NP_495808     13 IFILLLAGWLGQKYgLPPPPPKIAGIDLGTTYSSIGIYHAVTGeTIILPDDLGKKSVPSVVAFLpnGTVLIGTRATEQQE 92  nematode
AAI39563      12 ILALLLAGYLGQQY-LPPPKPRVIGLDLGTTFCSVGVFQPGTGeIEIIEDDKGRKSIPSVVSFTl-TGVFAGHEGQELSD 89  zebrafish
EDO40250      12 LFGLVVAGYIAQSR-LPPPKPKIIGIDLGTTYSCVGAYQAISGrIDIFSDENDDKVVPSLVAFTd-KGVLVGEKALSQAE 89  starlet sea ane...
EDP39398      45 LLSLLLAGYLARKYgLPPPAPKIAAIDLGTTFSSIGIYQAVTGiTDIVADETGRQSIPSVVAFLpnGTVIVGSKAVEQQE 124 agent of lympha...
Feature 1                  #                                                                     
NP_008879     90 sNPQNTIYDAKRFIGKIFTAEELEAEIGRYPFkvln-----kngmVEFSVTSNETITVSPEYVGSRLLLKLKEMAEAYLG 164 human
NP_001017223  90 aNPQNTIYDAKRFIGKIFTQEELEKESVRYQFkvln-----rngdVFFSVSTNETFAVTPEYISSQLLLKLKKMAEDYLG 164 western clawed ...
NP_495808     93 hNPKRTIYDAKRFIGRNFEKNNKDFLSDQKRYpfkinl-dsegkaFFEIPLDSGTKNVYPEEIGSLIIGYLKSAAAKHLG 171 nematode
AAI39563      90 vNPQNTIYDAKRFIGKIFDEETLEKESARYPFkvif-----nngsADFLVNTNSTFTVTPEFIGSRLLLKMRKMAEKQLG 164 zebrafish
EDO40250      90 iNPKNTIYDAKRFIGKTFTKQELLEIGKLYQFrvttd---krgnaGFLVGKKGNFTVITPEEIGGYVIKKLRTMAERNLT 166 starlet sea ane...
EDP39398     125 hNPLRTIYDAKRFIGRKLSEDDPQFQVDRKRYpfkieldmegrvlFVIPLQNNVIKKIRPEEVGAIIINYLRKAAEKKYG 204 agent of lympha...
Feature 1                  #                           #                      ###### #           
NP_008879    165 mpVANAVISVPAEFDLKQRNSTIEAANLAGLkILRVINEPTAAAMAYGLHKa-dVFHVLVIDLGGGTLDVSLLNkQGGMF 243 human
NP_001017223 165 lpVSKAVISVPAEFDERQRNYTVKAANLAGLdILRVINEPTAAAMAYGLHKv-dVFNVLVVDLGGGTLDVSLLNkQGGMF 243 western clawed ...
NP_495808    172 vtLGQVVISCPAEFNEKQRNFTAKAAEIAEMeVRRVISEPTAAALAYGLHKkqgVENVVVVDLGGGTLDVSVLWlQGGVF 251 nematode
AAI39563     165 vpVEKAVISVPAEFDERQRNYTIRAANLAGLdVLRVINEPTAAAMAYGLHKa-eVFNVLVVDLGGGTLDVSLLNkQGGMF 243 zebrafish
EDO40250     167 ttVTKAVMSVPAEFDIKQRNATVKAASLAGItVLRVINEPTAAALAYGLHKkegVANVMVVDLGGGTLDVSLLNiQGGMF 246 starlet sea ane...
EDP39398     205 teIIWAVISVPAEFDEEQRNATSLAVEKAGMeSRRVISEPTAAALAYGLHKkkdVQYIVVVDLGGGTLDVSILWlQGGIF 284 agent of lympha...
Feature 1                    ##                                   #  ##                          
NP_008879    244 LTRAMSGNNKLGGQDFNQRLLQYLYKQIYQTYgFVPSRKEEIHRLRQAVEMVKLNLTlhQSAQLSVLLtveeqdrkephs 323 human
NP_001017223 244 LTRAMAGNNKLGGQDFNQRLLQYLYDKIYTRYgSVPSQKEEIHRLRQAVEAIKLNLTlhNSSWVRMPLtlasthpdsskp 323 western clawed ...
NP_495808    252 VTQAMAGNNRLGGQDFNDRVQKHLISKIAEKFgKTIDNKEDIQQIRMEVEKGKIRLTnvPSTTISLNLk----------- 320 nematode
AAI39563     244 LTRAMAGNNQLGGQDFTQRLLQYTTERVRQQYgVPPTLKEDIHLLRQAVEAAKLNLTqePHVHLRVPLylqmtga----- 318 zebrafish
EDO40250     247 VTMAMAGNNRLGGQDFNARFMQYLLQLIHKRFnRQLTCSEDIQRLRQEVEAAKINLTrtNEVTIKLMLpsls-------- 318 starlet sea ane...
EDP39398     285 MTVAMAGNNRLGGQDFNNRVQSDLMQYIEEKYgKALDDQEDIQQLRLAIEAAKIQLTtlPATNIDLNLr----------- 353 agent of lympha...
Feature 1                                                                                        
NP_008879    324 sdtelpkdkls-----saddhrvnsgfgrglsdkksgesQVLFETEISRKLFDTLNEDLFQKILVPIQQVLKEGHLektE 398 human
NP_001017223 324 dkiipneslentgeihpksahlgdsysssgpqiqnkhaeKVYFEMEITRHIFETLNEDLFQKILIPVEQVLKEGHVlkeE 403 western clawed ...
NP_495808    321 --------------------------------------tVGKWNYELTRDEFETLNGDLLKAIELPITAALADANLdtaD 362 nematode
AAI39563     319 ---------------------------------sgaqeeKVLFEEKLTRETFEELNADLFQKILAPIETVLVEGHLdkqE 365 zebrafish
EDO40250     319 -----------------------------------egkkIVKFKETISRKMFETINEDLFKKVLQPIRRVLAEVELpkeE 363 starlet sea ane...
EDP39398     354 --------------------------------------sIGKMIYRLTRDNFEFLNEDLFESITEPIEAALNDAEIkasD 395 agent of lympha...
Feature 1               ### ##                      #                              
NP_008879    399 IDEVVLVGGSTRIPRIRQVIQEFFG-KDPNTSVDPDLAVVTGVAIQAGIDGGSWPLQVSALEIPNK 463 human
NP_001017223 404 VDEIVLVGGSTRIPRIRQVIRDFFG-KDPNTSVDPDLAVVTGVAIQAGIMGGSWPLQVSAIEIPNR 468 western clawed frog
NP_495808    363 VDEIVLVGGSTQVPAVRKIVGRFFK-KSANYGVDPELAVVTGASVQAGVIGGGWPLQVAAMELPAK 427 nematode
AAI39563     366 VDEIVLVGGSTRIPRIRQLISQYFG-KEPNTSVDPDLAVVTGVAIQAGIMGGSWPLQVSAIEIPNR 430 zebrafish
EDO40250     364 VDEVVLVGGSTRVPKIRQLIQEFFDgKPPNVAIDPELAVATGVSIQAGIIGGMWPLQVSAIEINNQ 429 starlet sea anemone
EDP39398     396 IDEIVLVGGSTRIPRVRSVVGRYFG-KAANHGVDPELAVVTGAAVQAGVIGGGWPLQVSAIELPVK 460 agent of lymphatic filariasis

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap