Conserved Protein Domain Family
RfaJ

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COG1442: RfaJ 
Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Statistics
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PSSM-Id: 441051
Aligned: 218 rows
Threshold Bit Score: 95.0405
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
NP_208207      7 PDQIIPIFMSFDKNYALGASVSLYSLLSHasrhtsmidfsplNqSnkllganIVYKIHCL-V--KGVTLEQQNKLLKTIA 83 
WP_004158193   1 --mKAWITLLTQPDYLVGVRALHASLRAS-------------H---------SRYPLVVMiT--ANIDAIACQQLERE-- 52 
WP_013902584   1 --mKAYVTLLSTADYLPGVLCLAKSLRATg----------------------TPHPLVVGlS--ASLPAECDEVLRQA-- 52 
WP_106437672  39 SRPLQPIVCGVDDGYARPLRTLMRSIAAA-------------H-Pgt----vGELRLIVL-D--QQISDANRKAILRDAD 97 
WP_015108827   1 ----MIIACTIDNNYIRHCAVMLKSLQLS-------------N-Pt------ESLSVYIL-H--GVIDAAERARLAAYLG 53 
WP_015131414   1 MNEQVRVYVGTDTSQLLAVKVLEHSIKRC-------------T-K-------LDVTVYP--------------------- 38 
WP_075096437   1 mPQTIQIAFSIDNDRVKPLLVALTSLVET-------------T-T-------SAVAVTIL-D--GGLSESHAARLRTAAD 56 
WP_089132004   5 ADGKYCLATVTTSSYLIGTAVLVHSFLEK-------------N-Nw------FDGDIVII-TetKNLSPSEIDILRGF-- 61 
WP_089133110   7 KNNRYCLATVLTPDFVPGGLAMIHSFLTH-------------N-Pw------FDGQIVIL-H--KDLEQRAQQDLTALYP 63 
WP_107260005  26 LASLPPIVCAVDDNFELPVRVLLHSLAVT-------------H-Rhc----lDELRVVIL-H--DALSLAPRTRIRAHAE 84 
NP_208207     84 PFkKf-A-SLEFIHI--NS---LdHSiesyLNks-cSKRy-gGL--LVLCRLLLASLFPn-ySKIISIDADTVFLGDVAS 151
WP_004158193  53 ---GciLrNVAPIRP--SPh--LsQS----YA----HARf-----sEVWTKL-AAWTLTe-fERVAFLDADMLVTQNMDE 110
WP_013902584  53 --------QLPTVRL--PAaspVpRT----MEq---NGHhw----gRTFDKLHLFGLAh--ySKLVYLDSDMLVLSSLDE 109
WP_106437672  98 RI-G--L-ATELRPA--P----LtDPr---YPv---SDWv--SG--AVYVRLAIPEVIPd-eHRVLYLDADTLVLGDLRP 156
WP_015108827  54 EF-L--P-SVSFLQL--DEq-mL-AG----FPv---FGHi--SL--ATYFRLLLPAALPhavEKVLYLDSDLIVVDSLRD 114
WP_015131414  39 -----------MLDL--P------------IKkpqnpNNwqrTG--FSFSRFCIPELAgy-tGKALYLDADMLVFQDIAS 90 
WP_075096437  57 LL-G--T-PLRIVPM--DRg-fL-GN----FPv---SDRd--RP--ATYARLQLPEVLPe-lDRVLYLDSDLIVRQDIAE 116
WP_089132004  62 ---D----RVMIVDI--GEe--LrENir-aLEeinpSf---lGKs-ARFFSLEVFNLEr--yEKVLFCDSDLLFLDSIKH 123
WP_089133110  64 --------DLRVQRIggD----LeSA----IArv-vARRpdlARrqSSFYKGDLLQLTt--aEKLFYVDSDMIFRGSIES 124
WP_107260005  85 QL-G--L-RLELVQS--PP---VdPR----FPv---WRRf--TA--AIYLRLKVHEVLAd-eSRVLYLDSDLLIMDDIRE 143
NP_208207    152 A-YfALDnDPtKSLGMVRDTFSHLSfeaf--------cdfcKRACK--NFKIDfsr-----fspDElk-riH-QGFNMGF 213
WP_004158193 111 L-F-SYPlMS-GTIAACHACRCNPEkiasypaswvpqncfySWCTGvdHLEQTd----------RV-----D-NYLNSGL 171
WP_013902584 110 L-F-ERPh-----lSAVPA-----------------------------G-RLV-----------HP-----DwDRLNSGL 136
WP_106437672 157 L-L-RQSlDG-RPVGAVRDPQNPVIgrg-----------iqLPGWE--KLGVP-----------YG-----R-DYFNSGV 203
WP_015108827 115 L-W-ESPlEG-NSIGAVEEhn-------------------qDFDRN--RLGLA-----------EG-----S-LVFNAGA 153
WP_015131414  91 L-W-NIPfDG-AK-VVIQEDIPNEY----------------QKTNK--KLGA------------PS-----Q-RIKQCSV 130
WP_075096437 117 L-W-NADlTN-VSAAVNEDvdg----------------npsSPLRT--ALRLG-----------PE-----E-ALFNSGV 158
WP_089132004 124 L-F---S-DN-QPLLCCGDgp--------------------------yYQGLNrnkysfkpcapKApeqelA-NTFNAGL 170
WP_089133110 125 LlF---D-NA-APLLAAGDky--------------------------hYLGQAmtkehyaeaepEEav--lD-RTFGAGF 170
WP_107260005 144 L-L-TQPlDG-FALGAVRDPVRPTLgcg-----------gaLPSWD--HLDFA-----------AD-----R-EYFNSGV 190
NP_208207    214 LVAHLDRWRQ--DGFEKTALEFLK--TR--GKDLFYPEQCLVNMVFWER----ILELPIYYNCYSDFFKEHy-------- 275
WP_004158193 172 LLLKPDR--AvfDQMLSALAAMDD------LKAYRFPEQDFLNHFYRAR----WRPLPWIYNALKTLPHQHpav------ 233
WP_013902584 137 MVIEPDAdlP--RAIGNRLDNALAtaAQ--AGNQAIGDQDLINAWAPGWps-sgLQLDEGYNVFDSLLDDYldrgyalp- 210
WP_106437672 204 MLIDLERCQR--LGVFDRSRQFLA--EH--PDKVRFWDQDALNWAIGDN----WHRLDRRWNTFAMSPQATqagfihyae 273
WP_015108827 154 MLIDLGRWRR--ESILANGLEFAR--TH--PERIKHWDQDVLNSLLEAR----WRPLDWRWNALPHLWMHPeytcadtp- 222
WP_015131414 131 MLLDCTRLN---WKIETII-DELD------QDKYNYEQLM-YELCILNEssdiKYSIPFKWNSLEh-------------- 185
WP_075096437 159 MLLNLARLRA--TGLANRAIAYAK--EH--PDRAAIAGPGILNVLLKDD----VARFPFRWNVTSCQDGSGggegrpeps 228
WP_089132004 171 MLIDQSLITR--SNYQ-SLVDMTTa-PHwtDSSITHTDQRIFNLFFAGQ----QKLVSPVYNYLLAHQNSIdaah----- 237
WP_089133110 171 MVMDRI-IRT--ENNHRRYLGQMElfDKg-VRTTGHTDQAIFNILFDGQ----IAHLGFEYNYHILVKKFVefet----- 237
WP_107260005 191 LLLDLDKCRS--TGLLDRASKILA--ER--PEVARFPDQDALNWSADDN----WLRLDQRWNTFAMSIVARradylhsae 260
NP_208207    276 -----------PKNI-IMLHFIK---YKPWRS--VSsL-NGrlic-yeaeASFWLA----NL-------FHTP------- 318
WP_004158193 234 ---------wqPERV-KNIHFIL---DKPWQK--RR---DKtdrd--falNSRWWD----IA-------QQLPgad---- 278
WP_013902584 211 ----tqpggdgAK-PvKVVHFIGp--VKPWHP--RAl-------------GRHWLR----SLq-----gRTSPaqrqmfr 259
WP_106437672 274 adsplaqlledEKTA-ALVHFAGp--DKPWQD-----T-YPvg-----elRDTYRL----FH------------------ 317
WP_015108827 223 ---lgrqaelaRASP-AVIHFAGsgvAKPWHH--RC-T-HPw--------RQRYLE----IR-------QQTP------- 268
WP_015131414 186 ----------yDQHT-CLIHYTDm-aTQPWAS--CQ---NKy--------AYLWFN----ELrlmlqdgslkleeiiqei 236
WP_075096437 229 arsrgedrrdaERSP-AIVHYAGp--VKPWHCspAArR-HPw--------YEDYFRavdrYH-------ERLGqvaelre 289
WP_089132004 238 --------pdiIDDI-KVFHFNGa--AKPWQL--MRsM-SAi--------DDNVLQ----FQ-------AAIR------- 277
WP_089133110 238 --------tatLDNA-IILHFAGw--NKPWDP--VAaMkAEnfdtelgraVRLWREv---YRdcmaslmSKQR------- 294
WP_107260005 261 hvvslesllraEEVA-SILHFSGr--NKPWQD--SCpQ-SRs--------RDLYRQ----LLrv----vERSVr------ 312
NP_208207    319 ----FKNDffkerlemakdqQMQSFKTHIRSQtirnylgfrvkNILKKVFK 365
WP_004158193     ---------------------------------------------------    
WP_013902584 260 lyrhWLRQplrptsaapyrpapga--------------------------- 283
WP_106437672 318 -------------------------------------------NYVAEVGA 325
WP_015108827 269 ----WAHLplegtpdtslgeRLGRLRFRVKRAg---------kEMLGRLAP 306
WP_015131414 237 nlghfrpslirelkygqfippflesyfrktnelldkksgfkphqevykfkk 287
WP_075096437 290 aprisvimpcrnvepflqqavesvlgqrvgaieviaindgstdstgrmldd 340
WP_089132004 278 ----WYQQfera----------------------------lshRHLAMLNG 296
WP_089133110     ---------------------------------------------------    
WP_107260005     ---------------------------------------------------    
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