1DCT,6MHT,1G55


Conserved Protein Domain Family
Cyt_C5_DNA_methylase

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cd00315: Cyt_C5_DNA_methylase 
Click on image for an interactive view with Cn3D
Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Statistics
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PSSM-Id: 238192
Aligned: 36 rows
Threshold Bit Score: 227.118
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:cofactor binding site
Evidence:
  • Comment:methyltransferases catalyze transfer of a methyl group from AdoMet or AdoHcy to the 5-position of cytosine residues in DNA.
  • Structure:6MHT_A; S-adenosyl-L-methionine (AdoMet) bound
  • Structure:1G55_A; S-adenosyl-L-homocysteine (AdoHcy) bound

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           ######                  ####                                              
1DCT_A      1 MNLISLFSGAGGLDLGFQKAg---FRIICANEYDKSIWKTYESNHsak-------------------------------- 45  Haemophilus influe...
6MHT_A     12 LRFIDLFAGLGGFRLALESCg---AECVYSNEWDKYAQEVYEMNFgek-------------------------------- 56  Haemophilus haemol...
462658      2 LRVFEAFAGYGSQRLALIKAni-pHEIVGISEIEGDVLLSYSAIHenlleernknikltddemrdylkninipld----y 76  Lactococcus lactis...
417325     11 LRVFEAFAGIGAQRKALEKVrkdeYEIVGLAEWYVPAIVMYQAIHnnfhtkleyksvsreemidylenktlswnsknpvs 90  Spiroplasma monobiae
400287      3 FTSLEICAGAGGQALGLERAg---FSHVALIEIEPSACQTLRLNRpdwn------------------------------- 48  Neisseria gonorrhoeae
AAC39764    4 LRVLELYSGVGGMHHALRESci-pAQVVAAIDVNTVANEVYKYNFphtq------------------------------- 51  Homo sapiens
AAC51939    4 LRVLELYSGVGGMHHALRESci-pAQVVAAIDVNTVANEVYKYNFphtq------------------------------- 51  Homo sapiens
1G55_A      3 LRVLELYSGVGGMHHALRESci-pAQVVAAIDVNTVANEVYKYNFphtq------------------------------- 50  human
AAC53529    4 LRVLELYSGIGGMHHALREShi-pAHVVAAIDVNTVANEVYKHNFphth------------------------------- 51  Mus musculus
547931      3 FRTLELFAGIAGISHGLRGI----STPVAFVEINEDAQKFLKTKFsda-------------------------------- 46  Chlorella virus IL3A
Feature 1                                 ####                 # #                            
1DCT_A     46 -------------------------likGDISKISSde--fpKCDGIIGGPPCQSWSEGGs---LRGIDDPRGkLFYEYI 95  Haemophilus influe...
6MHT_A     57 --------------------------peGDITQVNEkt--ipDHDILCAGFPCQAFSISGk---QKGFEDSRGtLFFDIA 105 Haemophilus haemol...
462658     77 ktfenradklggqklkdmyianklnknfGDIRSIDPkk--lpDFDFFTYSFPCQDISVAGyqngLVADSGTRSsLLWECC 154 Lactococcus lactis...
417325     91 ngywkrkkddelkiiynaiklsekegniFDIRDLYKrt--lkNIDLLTYSFPCQDLSQQGiqkgMKRGSGTRSgLLWEIE 168 Spiroplasma monobiae
400287     49 -------------------------vieGDVRLFQGeg--ydGIDLLAGGVPCPPFSKAGk---QLGKDDERD-LFPEAI 97  Neisseria gonorrhoeae
AAC39764   52 -------------------------llaKTIEGITLeefdrlSFDMILMSPPCQPFTRIGr---QGDMTDSRTnSFLHIL 103 Homo sapiens
AAC51939   52 -------------------------llaKTIEGITLeefdrlSFDMILMSPPCQPFTRIGr---QGDMTDSRTnSFLHIL 103 Homo sapiens
1G55_A     51 -------------------------llaKTIEGITLeefdrlSFDMILMSPPCQPFTRIGr---QGDMTDSRTnSFLHIL 102 human
AAC53529   52 -------------------------llsKTIEGISLedfdklSFNMILMSPPCQPFTRIGl---QGDMTDPRTtSFLYIL 103 Mus musculus
547931     47 -------------------------svfNDVTKFTKsdf-peDIDMITAGFPCTGFSIAGs---RTGFEHKESgLFADVV 97  Chlorella virus IL3A
Feature 1                                                                                     
1DCT_A     96 RILKQK----KPIFFLAENVKGMMaqrhnKAVQEFIQEFDNAGYDVHIILLNAnDYGVAQDRKRVFYIGFRKElninylp 171 Haemophilus influe...
6MHT_A    106 RIVREK----KPKVVFMENVKNFAshdngNTLEVVKNTMNELDYSFHAKVLNAlDYGIPQKRERIYMICFRNDlniqnfq 181 Haemophilus haemol...
462658    155 KIIEHK----KPKYLMMENVKNLVgknhkVNFNKFLLYLESLGYTNYWDILNArDFGIPQNRERVFCISILNPnedftf- 229 Lactococcus lactis...
417325    169 RALDSTekndLPKYLLMENVGALLhkkneEELNQWKQKLESLGYQNSIEVLNAaDFGSSQARRRVFMISTLNEfvelpkg 248 Spiroplasma monobiae
400287     98 RLAKET----DPKAIMLENVRGLLdpkfeNYRNHITEQFAKLGYLGQWKLLYAaDYGVSQLRPRVLFVALKNEytnffkw 173 Neisseria gonorrhoeae
AAC39764  104 DILPRLq--kLPKYILLENVKGFEv---sSTRDLLIQTIENCGFQYQEFILSPtSLGIPNSRLRYFLIAKLQSeplpfqa 178 Homo sapiens
AAC51939  104 DILPRLq--kLPKYILLENVKGFEv---sSTRDLLIQTIENCGFQYQEFLLSPtSLGIPNSRLRYFLIAKLQSeplpfqa 178 Homo sapiens
1G55_A    103 DILPRLq--kLPKYILLENVKGFEv---sSTRDLLIQTIENXGFQYQEFLLSPtSLGIPNSRLRYFLIAKLQSeplpfqa 177 human
AAC53529  104 DILPRLq--kLPKYILLENVKGFEv---sSTRGLLIQTIEACGFQYQEFLLSPsSLGIPNSRLRYFLIAKLQSepfpfqa 178 Mus musculus
547931     98 RITEEY----KPKIVFLENSHMLSh---tYNLDVVVKKMDEIGYFCKWVTCRAsIIGAHHQRHRWFCLAIRKDyepeeii 170 Chlorella virus IL3A
Feature 1                                                                                     
1DCT_A    172 ------------------------------------------------------------------piphliKPTFKDVI 185 Haemophilus influe...
6MHT_A    182 -----------------------------------------------------------------fpkpfelNTFVKDLL 196 Haemophilus haemol...
462658    230 ------------------------------------------------------------------pqkqnlTLSMNDLL 243 Lactococcus lactis...
417325    249 dkk-----------------------------------------------------------pksikkvlnkIVSEKDIL 269 Spiroplasma monobiae
400287    174 -----------------------------------------------------------------pepnseqPKTVGELL 188 Neisseria gonorrhoeae
AAC39764  179 pgqvlmefpkiesvhpqkyamdvenkiqeknv-epnisfdgsiqcsgkdailfkletaeeihrknqqdsdlsVKMLKDFL 257 Homo sapiens
AAC51939  179 pgqvlmefpkiesvhpqkyamdvenkiqeknv-epnisfdgsiqcsgkdailfkletaeeihrknqqdsdlsVKMLKDFL 257 Homo sapiens
1G55_A    178 pgqvlmefp------------------------------------------------kieihrknqqdsdlsVKMLKDFL 209 human
AAC53529  179 pgqilmefpkivtvepqkyavveesqprvqrtgpricaessstqssgkdtilfkletveerdrkhqqdsdlsVQMLKDFL 258 Mus musculus
547931    171 ------------------------------------------------------------------vsvnatKFDWENNE 184 Chlorella virus IL3A
Feature 1                                                                                     
1DCT_A    186 wdlkdnpipaldknktngnkc--iypnheyfigsystifmsrnRVRQWNE-PAFTVQAsgr--------qcQLHpqapvm 254 Haemophilus influe...
6MHT_A    197 lpdsevehlvidrkdlvmtnqeieqttpktvrlgivgkggqgeRIYSTRG-IAITLSAygggi----faktGGYlvn--- 268 Haemophilus haemol...
462658    244 eenvsekf---------------------------ylknnqvsDEPILQD-YIYCLDSnyw--------kgTFLkdflsk 287 Lactococcus lactis...
417325    270 nnllkynltefkktksn----------inkasligyskfnsegYVYDPEF-TGPTLTAsga--------nsRIKikd--- 327 Spiroplasma monobiae
400287    189 fdlmsen------------------------------nwqgahNWRLKAAqIAPTLVAvqknt---avltwDLHdpnahg 235 Neisseria gonorrhoeae
AAC39764  258 eddtdvnqyllp--------------------pksllryalllDIVQPTCrRSVCFTKgygsy---iegtgSVLqtaedv 314 Homo sapiens
AAC51939  258 eddtdvnqyllp--------------------pksllryalllDIVQPTCrRSVCFTKgygsy---iegtgSVLqtaedv 314 Homo sapiens
1G55_A    210 eddtdvnqyllp--------------------pksllryalllDIVQPTXrRSVCFTKgygsy---iegtgSVLqtaedv 266 human
AAC53529  259 edgdtdeyllp---------------------pklllryalllDIVKPTSrRSMCFTKgygsy---iegtgSVLqaaeda 314 Mus musculus
547931    185 ppcqvdnksyenstlvrl--------agysvvpdqiryaftglFTGDFESsWKTTLTPgtiigtehkkmkgTYDkvingy 256 Chlorella virus IL3A
Feature 1                                                                                     
1DCT_A    255 lkvskn----------------lnkfvegkehlYRRLTVRECA-RVQGFPD-DFIFHye----------------sLNDG 300 Haemophilus influe...
6MHT_A    269 -------------------------------gkTRKLHPRECA-RVMGYPD-SYKVHp-----------------sTSQA 298 Haemophilus haemol...
462658    288 krrqlv----------------sgkvrpdgkypARRLTPRETW-RFMGVEDtNFDKAsil--------------vsNTSL 336 Lactococcus lactis...
417325    328 ------------------------------gsnIRKMNSDETF-LYIGFDSqDGKRVneie------------fltENQK 364 Spiroplasma monobiae
400287    236 rswvwmvq------------vcgivrrlktftgMPRLTVRMTA-RIQGFPD-DWQFFg-----------------kKTPM 284 Neisseria gonorrhoeae
AAC39764  315 qveniykslt--------nlsqeeqitkllilkLRYFTPKEIA-NLLGFPP-EFGFPek---------------itVKQR 369 Homo sapiens
AAC51939  315 qveniykslt--------nlsqeeqitkllilkLRYFTPKEIA-NLLGFPP-EFGFPek---------------itVKQR 369 Homo sapiens
1G55_A    267 qveniykslt--------nlsqeeqitkllilkLRYFTPKEIA-NLLGFPP-EFGFPek---------------itVKQR 321 human
AAC53529  315 qieniykslp--------dlppeekiaklsmlkLRYFTPKEIA-NLQGFPP-EFGFPek---------------ttVKQR 369 Mus musculus
547931    257 yendvyysfsrkevhraplnisvkprdipekhnGKTLVDREMIkKYWCTPCaSYGTAtagcnvltdrqshalptqvRFSY 336 Chlorella virus IL3A
Feature 1                           
1DCT_A    301 YKMIGNAVPVNLAYEIAKTIKS 322 Haemophilus influenzae biotype aegyptius
6MHT_A    299 YKQFGNSVVINVLQYIAYNIGS 320 Haemophilus haemolyticus
462658    337 YKQSGNSIVVPVLESLFKELFK 358 Lactococcus lactis subsp. cremoris
417325    365 IFVCGNSISVEVLEAIIDKIGG 386 Spiroplasma monobiae
400287    285 YRQIGNAFPPPVAEAVGRQIIK 306 Neisseria gonorrhoeae
AAC39764  370 YRLLGNSLNVHVVAKLIKILYE 391 Homo sapiens
AAC51939  370 YRLLGNSLNVHVVAKLIKILYE 391 Homo sapiens
1G55_A    322 YRLLGNSLNVHVVAKLIKILYE 343 human
AAC53529  370 YRLLGNSLNVHVVAKLLTVLCE 391 Mus musculus
547931    337 RGVCGRHLSGIWCAWLMGYDQE 358 Chlorella virus IL3A

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