1RVK,1BQG,1YEY,1DTN,1TZZ


Conserved Protein Domain Family
MR_like

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cd03316: MR_like 
Click on image for an interactive view with Cn3D
Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Statistics
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PSSM-Id: 239432
Aligned: 99 rows
Threshold Bit Score: 195.908
Created: 23-Sep-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:active site pocket [active site]
Evidence:
  • Structure:1DTN; Pseudomonas mandelate racemase with bound competitive inhibitor (S)-atrolactate
  • Citation:PMID 7893689

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1RVK_A        2 IITDVEVRVfrtttrrhsdsaghahpgpahqvEQAXLTVRTEdgQEGHSFTapei-----vrpHVIEkfVKKVLIgedhr 76  Agrobacterium tu...
1BQG         15 VITDLKVVPvaghdsmlln----lsgahgplfTRNILILTDSsgHVGVGEVpgge-----girKTLEd-ARHLLInqsig 84  Pseudomonas putida
ZP_00520213  25 EIVQFHAWRlkep---------------vsgrRYTVVELQSRsgETGYGEGgpv-------paAEIVe-ARAAIQgrrvt 81  Solibacter usita...
NP_534674     2 KIDRMRVFVtrd-----------------kdrPRVIVALDTDdgMTGWGECynhgp--dlalpPVLDy-LYNFLAgqdpt 61  Agrobacterium tu...
ZP_00169013   2 RIEHFETIScda-----------------gwrNYYFLKVVTSdgIVGWSEYdesfg--ppgltAVIEq-LGARLVgksvy 61  Ralstonia eutrop...
ZP_00525050   2 KITSVRSFLlsyplpepvrlpfhggertilkrDAMFIRVEADsgLIGYAPGpgse-----qahKAIQqtIAPFLEdrvla 76  Solibacter usita...
YP_112075     2 KITEIETLRpee------------------fpNLLWVLVHTDegITGLGETfygac---saeaYIHEw-AANRLIgedpl 59  Burkholderia pse...
NP_354413     2 KITSVETLRtee------------------fsNVLWVRIHTDagVIGLGETfyga----gaveAHIHdvLAGRLLgrdpm 59  Agrobacterium tu...
1DTN          5 LITGLRTRAvnvplaypvh----tavgtvgtaPLVLIDLATSagVVGHSYLfaytpvalkslkQLLDd-MAAMIVnep-l 78  Pseudomonas aeru...
NP_107709     2 KIHSLETIRiee------------------rpNLLWIEVHTDegITGLGETffla----rtveEYVHeyVAPRVIgrdpl 59  Mesorhizobium lo...
Feature 1                                                                                       
1RVK_A       77 drERLWQDLAHwqrgsa----------aqltdrTLAVVDCALWDLAGRSLGQPVYKLIGgy--rdKVLAYGSIxcgdele 144 Agrobacterium tu...
1BQG         85 nyQSLLNKVRNafadrdvggrglqtfdlriavhAVTAVESALLDLLGQHLQVPVAALLGegqqrdAVEMLGYLfyvgdrn 164 Pseudomonas putida
ZP_00520213  82 esEFVRARLAGip-------------------aMEAAVGNAMLDLFSKSRKVPIYQFLGgpt-rfKARLLARLegsd--- 138 Solibacter usita...
NP_534674    62 rvEFLYNLMLQqnrfpp----------galglsAISALDHCLWDLAAKAVGVPVYKLLGgev-rnRIKVYAGVytapd-- 128 Agrobacterium tu...
ZP_00169013  62 dhEEAYGRLAAslrpap----------yglsaeAIGAIENALLDAKAKSLGLPVYQLLGgkh-rgSIPIYWSHcatwris 130 Ralstonia eutrop...
ZP_00525050  77 dpDALRVLFLQgpgid------------aelakIYCAVEIALYDLVGKARGIPISEMIGgrv-rdTIRLYGSAgmym--- 140 Solibacter usita...
YP_112075    60 qiDRHAKRLSGylgfrs----------agaemrGNSALDIALWDIFGKATGQPIYQLLGgkc-rdTIRTYNTCagphyvr 128 Burkholderia pse...
NP_354413    60 riEAHSRELVNlpmaqas---------tgaeyrAASAIDLALWDIFGKVCNQPVHQMLGglc-hdRIPVYNTCagygyvr 129 Agrobacterium tu...
1DTN         79 apVSLEAMLAKrfclagy---------tglirmAAAGIDMAAWDALGKVHETPLVKLLGan--arPVQAYDSHsldg--- 144 Pseudomonas aeru...
NP_107709    60 qiDLLSADLVGylgfrs----------sgvevrGNSAFDIALWDIFGKAMNQPIAQLLGgfs-rqSIRTYNTCagteyik 128 Mesorhizobium lo...
Feature 1                                                     # #                               
1RVK_A      145 g---------------------glatpedYGRFAETLvk-rGYKGIKLHTwxppvsw-------------------apdv 183 Agrobacterium tu...
1BQG        165 ktdlgyrseheadnewfrlrnkealtpesVVALAEAAydryGFKDFKLKGgvlr-------------------------g 219 Pseudomonas putida
ZP_00520213 139 --------------------------easAAAPLERAkr-qGFRAFTLPAlqrdamip-----------------lqeyv 174 Solibacter usita...
NP_534674   129 -------------------------apaaRDEFDRLNeg-wGFSAFKLSPwrvdihahr----------------wgevv 166 Agrobacterium tu...
ZP_00169013 131 hpnl---------------yppaivdldgVKKAGEDArk-sGISALKTNLfinengkprqwmagfgspyapslnvdkall 194 Ralstonia eutrop...
ZP_00525050 141 -------------------------spegYAAEAAAIaa-lGFRAYKMRPaggp-------------------------- 168 Solibacter usita...
YP_112075   129 takqqsvanwglansvsaryddlnaflhrADELALDLld-sGITAMKIWPfdpyaeasdgy------------yisksdl 195 Burkholderia pse...
NP_354413   130 snkikpvdtwnfrddaegpyedlrafmtdAGALAENLle-qGISAMKIWPfdpaaiendgr------------yitseql 196 Agrobacterium tu...
1DTN        145 --------------------------vklATERAVTAae-lGFRAVKTKIgypa-------------------------l 172 Pseudomonas aeru...
NP_107709   129 dgkgqttany--glgtrqgyddlngflhrADELAAELle-dGITAMKIWPfdhaaeksrgq------------ditagdl 193 Mesorhizobium lo...
Feature 1                             #                                #                        
1RVK_A      184 kxdLKACAAVREAvgpdIRLXIDAFHwys-------rtDALALGRGLEklgFDWIEEPXdeq----slSSYKWLSdnldI 252 Agrobacterium tu...
1BQG        220 edeIAAVTALSERfp-dARITLDPNGaws-------lkEAVALCRDQHh-vLAYAEDPCgaengysgrEVMAEFRrstgL 290 Pseudomonas putida
ZP_00520213 175 drvRAQVAKMQSMggstAEWVLDGAAamt-------pgDAATVAKALErvhMIWFDEPTnvl----ttDGLAKITdesvM 243 Solibacter usita...
NP_534674   167 rssAEYFRTLRETvradYDIAFDAHAkif------epsAARQLGNALApydPLFYEEPLrpe----niEMYGDLKqglnC 236 Agrobacterium tu...
ZP_00169013 195 rnlRAHLEALRDGagpdVDILVDLNFnar-------teGYLSLINAIKdfdLFWVELDIyn------pDAMAYIRqrshA 261 Ralstonia eutrop...
ZP_00525050 169 eqdLETVRQMRKAvgpdFDLMVDAHTwwrmgdssypadTVEQLARDMSayhIAWLEEPLppd----dhAGYLALKqkdlV 244 Solibacter usita...
YP_112075   196 kraLEPFEKIRRAvgdkMDVMVEFHSlwn-------lpPALQIAEALReyeTFWHEDPIrmd----slSSLKRYAerslA 264 Burkholderia pse...
NP_354413   197 raaLLPFEQIRKRvgdrMQIMVEFHSlwn-------lpTIKKIARELEafdPTWYEDPIrmn----svSALSELAastsV 265 Agrobacterium tu...
1DTN        173 dqdLAVVRSIRQAvgddFGIMVDYNQsld-------vpAAIKRSQALQqegVTWIEEPTlqh----dyEGHQRIQsklnV 241 Pseudomonas aeru...
NP_107709   194 kaaLQPFEKIRKAvgdkIDIMVEFHSmwq-------llPAIKIAKALGpygTYWHEDPIrmd----slADLKRYEaaspA 262 Mesorhizobium lo...
Feature 1            #                       #                          #                       
1RVK_A      253 PVVGpESAagkhWHRAEWIkagACDILRTGVNDVggITPALKTXHLAeafgXECEVHgn------tAXNLHVVaatk--n 324 Agrobacterium tu...
1BQG        291 RTAT-NMIatdwRQMGHAIqlqSVDIPLADPHFWt-MQGSVRVAQMCnewgLTWGSHsnnhfdislAMFTHVAaaap-gn 367 Pseudomonas putida
ZP_00520213 244 PIGLgRKIhd-iPAFQNLLrqaSVNVLRPGLGLNs-LTKIKRIAALAethyVAVAPYhegg-pigaMAGVQLAaala--n 318 Solibacter usita...
NP_534674   237 TLATgESLyn-rNEFLRLLqvkGADIIQPDICVVggISEMRRIATLAeahfVSIAPHnpmg-platAVNVHFCavqq--n 312 Agrobacterium tu...
ZP_00169013 262 PIAAcETLfg-iRQFLPYFqaqSMDVAIVDAVWNg-VWQAMKIASVAdafdVNIAPHnfys-hlstMMNVHFAaavp--n 336 Ralstonia eutrop...
ZP_00525050 245 LLATgEHEpn-eDRYLDLIltqAVDYIQMDVCCQggYALGRRLFAEIarqgLSFAFHswgt-alevMAAAHLGicwpqmi 322 Solibacter usita...
YP_112075   265 PVCAsETLat-rWGFRDLLetnAAGIVMLDISWCggLSEARKIASMAeawhLPVAPHdctg-pvvlTASTHLSlnap--n 340 Burkholderia pse...
NP_354413   266 PICAsETLgs-rFPYKDMLeagAIGIVMTDLVWTggLTEGRKIAALAdtyhRPYAPHdctg-pvayAAAVHSSfsqt--n 341 Agrobacterium tu...
1DTN        242 PVQMgENWlg-pEEMFKALsigACRLAMPDAMKIggVTGWIRASALAqqfgIPMSSHlf------qEISAHLLaatp--t 312 Pseudomonas aeru...
NP_107709   263 PISAsETLgs-rWAFRDLLetgAAGIVMLDISWCggLSEARKIAAMAeawhLPVAPHdctg-pvvlAASTHLSlnap--n 338 Mesorhizobium lo...
Feature 1           #                                                 
1RVK_A      325 crWYERgllhpfleyddgh-------dylkslsdpxdrdGFVHVPd-rPGLGED 370 Agrobacterium tumefaciens str. C58
1BQG        368 itAIDThwiwqdgqrl--------------tkeplqikgGLVEVPk-kPGLGVE 406 Pseudomonas putida
ZP_00520213 319 syAVDVpvptadrdaamra--------eltsgnkeaaenGFAALMn-rPGLGFE 363 Solibacter usitatus Ellin6076
NP_534674   313 frILEYrlpkgqvyayggndlvkeedvtryvvdpylprdGYLELRpdrPGWGVE 366 Agrobacterium tumefaciens str. C58
ZP_00169013 337 lrVMEVdvdrlawddq-------------lftrtpeivnGAIQVPd-aPGWGCD 376 Ralstonia eutropha JMP134
ZP_00525050 323 aeWLEYpcysspgrvgmypfp----laaeiltepleierGDLLVPr-aPGLGVA 371 Solibacter usitatus Ellin6076
YP_112075   341 alVQESvrafydgwyrd------------lvtalptvkdGHITVPd-gPGLGLE 381 Burkholderia pseudomallei K96243
NP_354413   342 tmIQESvrafytgwyce------------lvtnlpvienGFVLPMe-gPGLGTE 382 Agrobacterium tumefaciens str. C58
1DTN        313 ahWLQRldlagsvi-----------------eptltfegGNAVIPd-lPGVGII 348 Pseudomonas aeruginosa
NP_107709   339 alVQESvrafyrtwyrd------------lvtalpevrdGMITVPp-gPGLGLQ 379 Mesorhizobium loti MAFF303099

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