1RU4


Conserved Protein Domain Family
Beta_helix

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pfam13229: Beta_helix (this model, PSSM-Id:404168 is obsolete and has been replaced by 463811)
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Right handed beta helix region
This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Statistics
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PSSM-Id: 404168
Aligned: 97 rows
Threshold Bit Score: 37.0029
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1RU4_A        108 YGF-YVTGDYW-----YFKGVEVTRA----GYQGAYVIGSHN--TFEnTAFHH------NRNTGLEINNGg---SYNTVI 166  Dickeya chrys...
EAY02623      265 NII-IMTQQAQa----VFTETTVQKS----AQNGVVLRNQTKa-LFEkCIFNEigrcaiISADKTEFFCDdstiMKIGGE 334  Trichomonas v...
XP_003059328  432 QAI-HVEGGDAvd--aLIENCRIKAS----GDDGICVDGSARp-TFRnCDVTG-------KKSALRTMGN----ARAELV 492  Micromonas pu...
Q4E3J7        767 FGV-VVNGPSAs---vTMSNVTIEDS----GVAGVFVQRGGVc-RFEqCVIKR------SKEDGIRMEQA----GAVVFE 827  Trypanosoma c...
EAY20278      182 RGL-NLRSATTa----FVSRSTFLGM----TTHGVSATQKSQy-VIEeSSFSS------CRAAAIESKTDg---KLLQVD 242  Trichomonas v...
EAX90091      339 NGL-IVKARAAt----TIKDSNFQDI----RKDAVHLIDNCSa-VFKsVKVNN------VGAHGFLISSEs---KRISLI 399  Trichomonas v...
Q5WHY7        106 WGI-HVLEDGHl----DLTDATIRH-----SGIGLFVVGRAR---AEyCALYS------QRGSQVCVSGN----GRFVMK 162  Bacillus clau...
EAY05748       80 QGLvHCTGEGTl----IARNCTFTPSdq-qPNTAVEVFAQSKc-IFEnCVFSN------AIVCPLTIRDR----ASFEII 143  Trichomonas v...
EFA77968      671 GGV-WATQTSL-----TFTDSTIQSIrsgpNKTDTYLAQQCNl-VFSnCNFID--------HGDIYLAS-----SNIELT 730  Heterostelium...
CAM45366     1122 ANI-LLDHFDGathetTITENTIYG-----APYGVCVAHNSTvcSMSkNEVHT-------CMDGFAFTSG----GHGCYT 1184 Leishmania br...
1RU4_A        167 NSDAYRNYdpkkngsmadGFGPKQKqg-pGNRFVGCRAWEN-SDDGFdl-fDs-PQKVVIENSWAFRNGinywndsafag 242  Dickeya chrys...
EAY02623      335 GISISSCGq--------------------NTIVAKTQILEC-ANVGIls-yV--VSTPVVRECTIKDCG----------- 379  Trichomonas v...
XP_003059328  493 DCKLHCCE----------TSGVKTFge-sRATLRDCHIENC-QHEGVva-mQ--RSTVHMENCVVVDNK----------- 546  Micromonas pu...
Q4E3J7        828 QCSILEQHqgv----kttGTLGTARad-gEPKLINCTIDGSfCEKGVls---tkKSIVRLELCKISARSpe--------- 890  Trypanosoma c...
EAY20278      243 ACRIENCD------------SGILVfn-gSVTVSNSKIGSM-SNYSLlv-qG--SAQVTTNGNEFNDNS----------- 294  Trichomonas v...
EAX90091      400 DCEITDCR----------ETGISAFla-sSLTLHRNTIKKC-KT-CLev-sD--GSSILMKSNRFMDTY----------- 452  Trichomonas v...
Q5WHY7        163 HSHIYQGK----------SAAIYFDqn-sRSFVENCQIYGH-HSENMql-kSmgNSEVALKDCLIYEGS----------- 218  Bacillus clau...
EAY05748      144 NCTFHLNT----------QTSLLILes-aKGFVNKSTFLGT-DKFSVyv-fS--NSQCEFNECKFSEIA----------- 197  Trichomonas v...
EFA77968      731 ETTLSNSR-----------TFIQLLps-sSAFVTNCTFYDN-ED-SIflqqS--NSYLIVLNSQFYNNRa---------- 784  Heterostelium...
CAM45366     1185 ANHIHDCT----------YSGVYVSdmahPSLADSNCIENC-GFCGVlv-dV--SGQGVFRRNTIRHCE----------- 1239 Leishmania br...
1RU4_A        243 nGNGFKLGGNQavGNHRITRSVAFGNV---SKGFDQNNNAGgVTVINNT 288  Dickeya chrysanthemi
EAY02623      380 -RSLIEVTDGA---ALRSIQNRFQGGC---KQALFATHHTT-IASEGDT 420  Trichomonas vaginalis G3
XP_003059328  547 -GPGVDASDDA---RVVLVDVVVDDNV----GGVWLWDHAS-CDVRGGV 586  Micromonas pusilla CCMP1545
Q4E3J7        891 kGRGVVVQDGG---TVLLSQCDVFGCP---RVGV-IASAMSqLMVENST 932  Trypanosoma cruzi
EAY20278      295 -GEGAVIACEG--GRLIANKDKFTGIM---KCGIAAFSKSS-IKVSDAT 336  Trichomonas vaginalis G3
EAX90091      453 -SDAMVICFCH--ANVLSQEDTFSGIG----NGLCAMERSR-VTVQGGK 493  Trichomonas vaginalis G3
Q5WHY7        219 -SGGALVLGES---KLTLNSCTLTNNV---PKQVVVLGGET---IIQNS 257  Bacillus clausii KSM-K16
EAY05748      198 -GKGAYVFKNS---EATFNKCRFEKIK---GGAINCSTDGT-TIVDNCT 238  Trichomonas vaginalis G3
EFA77968      785 -SQGSVLYQLTq-AKATFNNNNFTGNSaskNGGCIYVGQYS-TTTLTDT 830  Heterostelium album PN500
CAM45366     1240 --TGVVVFCGPt-TPFHMSHEEVTNAR--------ILTSTP--IFTENT 1275 Leishmania braziliensis MHOM/BR/75/M2904
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