Conserved Protein Domain Family
Syndecan

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pfam01034: Syndecan (this model, PSSM-Id:395821 is obsolete and has been replaced by 460035)
Syndecan domain
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors.
Statistics
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PSSM-Id: 395821
Aligned: 16 rows
Threshold Bit Score: 63.8838
Created: 22-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8I4H9        226 GFYAAIAGGVLVAVITAILLVLFVVFRIRKKDEGSYALDEPKQarpYASYgYt-KASTK--EF 285  Caenorhabditis elegans
EKC21352        5 GLLAAVIGGAVVALLLTILLVMFIVYRMRKKDEGSYPLDEQKY---TNYS-Ym-KAPDK--EF 60   Pacific oyster
ESO05124      252 VILALIIGGVILSMLIFVLVVMFIVYRLRKKDEGSYALDENLKkksKNIE-Yt-KAPQahnef 312  Helobdella robusta
NP_001118233  150 AILAGMVGAVVLILLTVVLLFLFVIYRIKKKDEGSYSLDEPHKvkdPTAY-W---KDTK--EF 206  purple sea urchin
BAA75815      153 QFMAALIVGGCVGLLFAVCVIMLLAYRMRKKDEGSYALDEKKP---STAYqY-----TQgqEY 207  Pacific transparent sea squirt
CAG00013      213 EVLAAVIACGVVGFLCAVSLLLFLAYRMKKKDEGSYDLGDNKL---SNAQ-Yh-KAPTK--EF 268  spotted green pufferfish
XP_006007744  142 EILAAVIAGCSVGLLFAILLIVLLIYRMKKKDEGSYETGKNPI--------Yk-KAPTN--EF 193  coelacanth
XP_002588429 1499 GVMAAVIGGAVVGLLCAILLIMFIVYRMKKKDEGSYSLEDHPAkklNTNA-Yg-KTSKEfya- 1558 Florida lancelet
EFX80810      322 GILAAVIGGAVVGLLCAILLVMFIVYRMRKKDEGSYVLDEPKRnspNSNP-Y--NKNSR--Ef 379  common water flea
EDW02148       60 GILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDEPKRs-pANNS-YakNANNR--EF 118  Drosophila grimshawi
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