2BMU


Conserved Protein Domain Family
AAK_UMPK-PyrH-Pf

?
cd04253: AAK_UMPK-PyrH-Pf 
Click on image for an interactive view with Cn3D
AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Statistics
?
PSSM-Id: 239786
Aligned: 18 rows
Threshold Bit Score: 251.399
Created: 30-Sep-2005
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:uridine monophosphate binding site [chemical binding site]
Evidence:
  • Structure:2BMU; UMP kinase from Pyrococcus furiosus complexed with its substrate UMP and its substrate analog AMPpnp.
  • Comment:contacts with UMP defined by 3.5 A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                  #                           #  #   
2BMU_B      3 RIVFDIGGSVLVpenpdiDFIKEIAYQLTKVse---dhEVAVVVGGGKLARKYIEVAEKFn------sSETFKDFIGIQI 73  Pyrococcus furiosus
2688487     2 LEIISLGGGVINsnqiniEFIKNFKNFVFKWllenekrKIILIVGGGRVAREYQDAYKKInp----dfKVHELDEIGIIS 77  Borrelia burgdorfe...
NP_560534   2 ALVIKLSGRVFEd----eELVFKYAGVIRNLs-----gKVAVVTGGGEVARRYIAIAKRGg------aSNTFQDLLGIYA 66  Pyrobaculum aeroph...
AAK41250    3 NIILKISGKFFDed--nvDNLIVLRQSIKELadn--gfRVGIVTGGGSTARRYIKLAREIg------iGEAYLDLLGIWA 72  Sulfolobus solfata...
Q9YF40      5 SVVVKISGSLVHpp--rlDYLTRLRDVLWGLvdg--gfRVAVVVGGGGLARSYIDVLRRAg------vSEALLDEMGIES 74  Aeropyrum pernix
NP_972686   2 VTVLSVGGSIVApdkpdfDFLDKFSKTIRNWllqdssrKIIMVIGGGAPARDYQNAYRKVcdlrkapaKNDEADWIGIMA 81  Treponema denticol...
AAT44029   16 RVVISLGGSIISmeklnlEFMEEFSRMLGNIkg---ydGFGIVVGGGKLARTYISDLRKYn------vNDNILDEIGINA 86  Picrophilus torrid...
YP_448382   2 RIVITIGGSILLkey-dnKKFEDYAKIIRQIne---dhEIFIVVGGGRPARDYISVVRDMg------eTESICDEIGIQV 71  Methanosphaera sta...
YP_502520   3 TIVLSLGGSILLpdi-drPNIKPYISVLTRIsa---knRLFVVVGGGGTARQYISLARSFe------aDEAFSDELGIMV 72  Methanospirillum h...
CAC11628    4 SIVISLGGSVISgdpidaDYMKSFARILEASky----rRVGIVTGGGRTARSYISVLRKLn------vNENVLDEIGIYA 73  Thermoplasma acido...
Feature 1                                              ## # ###  #                            
2BMU_B     74 TRANAXLLIAALrekAYPVVVe-dFWEAWKAVQlkKIPVXGGThPGHTTDAVAALLAEFLKADlLVVIT-NVDGVYTADP 151 Pyrococcus furiosus
2688487    78 TRLNAEFLSKVMn--PFCKDKi-vTNPLKNFSFkgKILIASGWkSGFSTDYIAVKFAEKFNKKdIINIT-NVNQVYDKDP 153 Borrelia burgdorfe...
NP_560534  67 SRLNALLLISLLk-dAYPRVPa-nIEEFLEAWSghRIVVTGGFqPGQSTATVAALVAEAVGASaLLNAA-NIDAVYSDDP 143 Pyrobaculum aeroph...
AAK41250   73 SRLNAYLVMFSLqdlAYMHVPq-sLEEFIQDWShgKVVVTGGFqPGQSTAAVAALVAEASSSKtLVVAT-NVDGVYEKDP 150 Sulfolobus solfata...
Q9YF40     75 SRLNASLLAKLLy-pRSQPYPlasLREVLEVFMtgLIPVSGGFqPGQSTNAVAAVIAEALGARtLLNCLkGVEGVYSDEP 153 Aeropyrum pernix
NP_972686  82 TRLNAQLVKAVFe--DLCPNPv-vYDPTTVDMFggQILVAAGWkPGFSTDNDAVVLAERFSGNlVVNLS-NIAKVYTDDP 157 Treponema denticol...
AAT44029   87 TRINALAMTTFLd-dVNSKIPt-tVNDAAEMMHdyRYVVMGGTePGHTTDTVAMLFAERINADvMINGT-SVDGVYTEDP 163 Picrophilus torrid...
YP_448382  72 TRINARLLQLALkdvSYPAIPv-nFQQALEFSAtgKIVVMGGTePAHSTDAVGSILAEYVGADlVINAT-SVDGLYDKDP 149 Methanosphaera sta...
YP_502520  73 TRLNATLLVGALgqaAYPCVVt-sHTEALCAAEtgKIVVMGGItPGQTTDAVAAVLAERTGADiFINLT-AVDGIYSADP 150 Methanospirillum h...
CAC11628   74 TRMNALSMASLIp-gSNPTIPf-tVEDAVNLMNtyRFVVMGGTePGHTTDTVAALLCERSATRtLINVT-SVDGVYDMDP 150 Thermoplasma acido...
Feature 1                                 ##                                               
2BMU_B    152 KKdpTAKKIKKXKPEELLEIVgkg-ieKAGSSSVIDPLAAKIIARSgIKTIVIGkedakDLFRVIKgd--hnGTTIE 225 Pyrococcus furiosus
2688487   154 KKfkNATAFKKLNWKQLQNIVgq--kwNPGLNLPFDPIATKLSSKLgLTLYIVNgnnieNLEKVFNknndffGTIIV 228 Borrelia burgdorferi B31
NP_560534 144 RRnpNAQRLRELKYDEFEKIIrs--ssLPGGYELMDVWSISILKRNcITTYVFDgrrpdHVVAAARge--npGSKIT 216 Pyrobaculum aerophilu...
AAK41250  151 RIyaDVKLIPHLTTQDLRKILegsqsvQAGTYELLDPLAIKIVERSkIRVIVMNyrklnRIIDILKge--evSSIIE 225 Sulfolobus solfataric...
Q9YF40    154 STp-GARLLRRLTYRQLEDILvkvssqRAGSYTLWDMVALSVARRSgLRIVFFDcsdpaNIWGALKge---kGSIVE 226 Aeropyrum pernix
NP_972686 158 KKnpEARPIDSISWEDFIKIVgt--ewVPGKNTPFDPIASQRAQKAgIKVICAAgkdieNLENILNgkd-fkGTVIG 231 Treponema denticola A...
AAT44029  164 RKnrNAKKIDRMNYDDAIKLSien-siGAGSNVFMDITSLSIAKRSgIKIFVINglkidEYINILYngt-cnGTIIE 238 Picrophilus torridus ...
YP_448382 150 NKynDAQMFSEVSADKLMEIVsdn-dtKAGTYEFIDKTAIQIIKRSkIKTVIVNgntpeNVKTAITqp---iGTLIT 222 Methanosphaera stadtm...
YP_502520 151 RKdpAAKRFETMNPAELLDVVigq-qaVAGVNTVMDIVAVKMVERCgIPLLVMDgrdpaLLESTLEtgr-fvGTLVT 225 Methanospirillum hung...
CAC11628  151 HRfaNAKRFDRIGYREAIALStks-saGAGPNVFMDITALTIAMRSrIRVIVTSrd-idNLEKILKgdr-avSTFID 224 Thermoplasma acidophilum

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap