Conserved Protein Domain Family
Retrotran_gag_2

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pfam14223: Retrotran_gag_2 (this model, PSSM-Id:404992 is obsolete and has been replaced by 464108)
gag-polypeptide of LTR copia-type
This family is found in Plants and fungi, and contains LTR-polyproteins, or retrotransposons of the copia-type.
Statistics
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PSSM-Id: 404992
Aligned: 50 rows
Threshold Bit Score: 105.02
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
KRG99842       76 WRKKDNLLRGWIIGTLFEEALRLVV-GLDTTHAIWTALKDSYAEDSQEYEF---TLHQQITYLRKEDDQSIGEHIRTFQG 151 soybean
18_pfamImport   1 YNISVSRVKTIILCSINQKLRCTLI-NCTSVTKMWEKFNELYGDTSADAKQ---AAWKKLYAFHITEDKTVRMHLERFES 76 
EGI60441       51 WKKKDALARSLLSKSLDDAHFNLVV-ACKSSADMWKTLVGHYDEVSNTTKL---AALEAYNDYHWKNDMTVTSYISGLML 126 Panamanian lea...
CEL63601       75 WKKRDREAYAQITLNMEDEAMADVM-RTRTARDAWKKVIERWEGKGVQSLS---FLYQQLTTAKIEEDEDIATAFNNIRS 150 Rhizoctonia so...
8_pfamImport    1 WIKKDNQARTIIILSMEDDQLLHIK-GTSTAREIWLKLKHHHQRSTTLSKV---HLMRRPFNIKMSSDGDVESHITEMLT 76 
ERM97817       80 MLSKNAKAKYALICGLDRDIFKNIE-QASTAYDMWKMLEVTHQGTSAMKETkiqIYSTQYENFKMKSDETIANMYTRFTT 158 Amborella tric...
EMD33623      111 WRKKEAKARDLLARLVPDSVLRRMKrNGDSVADMWIWICSEFEDKTPLVQS---NMLERFQTTRCSEHGDVSKHLDTLGE 187 Gelatoporia su...
EGO02489       29 WSKKEYCAKNILGCMVSDLTLQQIL-HKDTVVEMWDLIHQENKNKTKLIQA---ELQDKLAALHCPKKGNMHTHIDKIRD 104 Serpula lacrym...
XP_002894753   23 rlweineaTVFFMTTLSDEMVVAVN-NKRYAYEIFEHLEKTYEPRSWGCLC---ALREQFVALKYQDGADMLTHINGLKT 98  Phytophthora i...
RVW29768       69 REEDELICRGHILNALSDKLYDPYT-NTYSAREIWEALENKYKAEEEGTKK---FLISQYIDFKFFDEKPLLPQIHELQV 144 wine grape
KRG99842      152 LCDNLAAIGKPVPDKEKVFYLLTSLGHEYETFTKTMLK-----PPRPSYSELISQLQSHDQRRNWF 212 soybean
18_pfamImport  77 IVKKLEEVDKKPPKEAIVSKLLNSLPEKFKLFTIAWKCt---pKDDRTQKTLIARLIKEDNRLAEK 139
EGI60441      127 IENKLKAQKLNIEKEMIITKIVRGLPQKFDNFKQVWRIc---pTKDITVEQLQAKLLDVERDVNVT 189 Panamanian leafcutter ant
CEL63601      151 LAKKMETLGEPISDLMLAQMMMTALPPSYSVVTSVIQTtn--qASAVNPDMVQDTVLAEEERRRKG 214 Rhizoctonia solani AG-1 IB
8_pfamImport   77 MLNKLTVMGQELDDTLKAALVLNSMPESYDVLTSTLRCq---nEKDFTLASVKGRLLDEYHRRKDV 139
ERM97817      159 ITNGLNSLGKVLTQKDMVTKILRSLTKAYQGKVVAIQEak--dLSTLPLEELIGSLMNHEIFMSAQ 222 Amborella trichopoda
EMD33623      188 MVEELSAIGVEVSDQDYCAQILKSVPSQYADFLSGMMNagrllGTFITPDQAIQYLKQEYERKRLP 253 Gelatoporia subvermispora B
EGO02489      105 MWEQLSAAGVYLTDKEKALNMLRSLSSTCAIFVSQLSVsahmnGKSINPETLIVNLLQEY-----D 165 Serpula lacrymans var. lacry...
XP_002894753   99 LAGRLSNQGKPVDDTEKVDQLLSSLPRSGDSFKSHYYI----------QETLIAWISMETNVMAEA 154 Phytophthora infestans T30-4
RVW29768      145 IVNKLKVLKIELLEAFQVGAIVAKLPSSWKVYRKRILHk----SEDYSLEEIQKHLHIEEESRLRD 206 wine grape
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