1NL5,2ZYK,2GH9,1URD,2FNC,1ELJ,2GHA,1URG,1ZIU,2XD2


Conserved Protein Domain Family
PBP2_Maltose_binding_like

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cd13586: PBP2_Maltose_binding_like 
Click on image for an interactive view with Cn3D
The periplasmic-binding component of ABC transport systems specific for maltose and related polysaccharides; possess type 2 periplasmic binding fold.
This subfamily represents the periplasmic binding component of ABC transport systems involved in uptake of polysaccharides including maltose, maltodextrin, and cyclodextrin. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270304
Aligned: 32 rows
Threshold Bit Score: 300.751
Created: 20-Aug-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1URD; the maltose-maltodextrin binding protein of the thermoacidophilic bacterium Alicyclobacillus acidocaldarius in complex with maltotriose, contacts at 4A.
    View structure with Cn3D
  • Structure:1NL5; Escherichia coli maltose-binding protein binds maltose, contacts at 4A.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                            ##          
1NL5_A         6 KLVIWIngdk---gynGLAEVGKKFEkdt-giKVTVEHpdkl----eekFPQVAATGdGPDIIFw-aHDRFGGYAQSGLL 76  Escherichia coli
O06989        37 VLTVSVeet----ykeYIESIKTKFEken-dvTVKIVEkqmfe--qleaLPLDGPAGnAPDVMLa-aYDRIGGLGQQGHL 108 Bacillus subtil...
YP_001634133  53 TVTLWHaygtgsaeekAINMLIDRARaaypdaTINVLQipfdq-ifnkfNNEVSSGG-GPDMFIa-pNDSLGSQIRAGVL 129 Chloroflexus au...
1URD_A         2 TITVWSwqtg--pelqDVKQIAAQWAkah-gdKVIVVDqssnp-kgfqfYATAARTGkGPDVVFgmpHDNNGVFAEEGLM 77  Alicyclobacillu...
ADN01962      35 LITLWTqegeaegafqFVQTLAQEFSeahegvTIEVLNkdtea--lredFQTASLAGaAPDLLWt-vNDHAGPFVVADLI 111 Spirochaeta the...
ADO77243      42 TIKYWEsidat-ldsvLTDGLIKKFEskypniKVEATHqgved--lrqnTQTAYMGGqGPDVVLs-pFDHIGPFSIMGLA 117 Halanaerobium p...
YP_001620653  42 TITVWIddq----ngeYMQAVIAEFNktdagkDIIVQHqhmgtvdarerLKTFGLTGnGADIFQf-pHDHLASAILEDLV 116 Acholeplasma la...
NP_968138     22 RIQIWHqmiy--ghrqVLAEALEKFEkenpgiTVQATYretee-lrssfQSAAMGGS-GPELVYg-pSDQVGPFATMGIV 96  Bdellovibrio ba...
2XD2_A        36 ELTVYVdeg----yksYIEEVAKAYEkea-gvKVTLKTgdalg--gldkLSLDNQNGnVPDVMMa-pYDRVGSLGSDGQL 107 Streptococcus p...
NP_342629     89 TITVWNsyst--senqAFNETLAQFEqafpwiHVQVTYgvgvg--tsqfETAAKAGQ-APIVYRd-tSDSGGALFAAGLV 162 Sulfolobus solf...
Feature 1                                                           #                            
1NL5_A        77 AEitpdkafqdkl-----------------ypftwdavryNGKLIAYPIAVEALSLIYNKDLLp-nPPKTWeeipaldk- 137 Escherichia coli
O06989       109 LDikpsntksfg-------------------dkemqqvtvDGKVYGMPLVIETLILYYNKDLLk-tAPKTFkdleklted 168 Bacillus subtil...
YP_001634133 130 ADlseyqskltdv-----------------sptgvagmslDGKLYGIPESFKAVALYYNKSKVa-nPPATTdellal--- 188 Chloroflexus au...
1URD_A        78 APvpsgvlntgly-----------------apntidaikvNGTMYSVPVSVQVAAIYYNKKLVp-qPPQTWaefvk---- 135 Alicyclobacillu...
ADN01962     112 QPvenlvdls----------------------kyvpsvemKGHVWGVPISSGNHLMLLYNKDLvpnPPKTTdelikigs- 168 Spirochaeta the...
ADO77243     118 QPldnlmsdkmknk---------------yinsalagmslNGKNYGVPVTMGNHLMLMYNKNIvdqPPATWedliaiaqe 182 Halanaerobium p...
YP_001620653 117 YAlpssvatrvaerahplgmdiatllydestgvfgpganaQENVYAVPMSLEAIGLYYNKDLVs-tPAATMeellaaaat 195 Acholeplasma la...
NP_968138     97 RPldevlgsdyfq-----------------nfdplaapvyDGKHYMIGDAVGNHLMLLYNKKFittPPKNSqelielgkk 159 Bdellovibrio ba...
2XD2_A       108 SEvklsdgaktd------------------dttkslvtaaNGKVYGAPAVIESLVMYYNKDLVk-dAPKTFadlenlakd 168 Streptococcus p...
NP_342629    163 LNlsqylpqsitsl---------------yvptaikdwelNGSLYGLPDNVNYIVMFYNKKFVpypPNTTEqlvqiaes- 226 Sulfolobus solf...
Feature 1                                       ##                                               
1NL5_A       138 ---------elkakgksALMFNlq-----epYFTWPLIAADGGYAFKYGdi----kDVGVDNag--aKAGLTFLVDLik- 196 Escherichia coli
O06989       169 pr----fafasekgkstGFLAKwt-----dfYMSYGLLAGYGGYVFGKNgtd--sgDIGLNNkg--aVEAVKYAEKWfe- 234 Bacillus subtil...
YP_001634133 189 ------------vkagnTLVLNqn------aYHNFGWLQAFGGQLMDANg------KCIADQag--gAEWFAFLKALkev 242 Chloroflexus au...
1URD_A       136 ------------danahGFMYDqa-----nlYFDYAIIGGYGGYVFKDNngtldpnNIGLDTpg--aVQAYTLMRDMvsk 196 Alicyclobacillu...
ADN01962     169 ---------qlkakgviPLVFNqt-----epFWLVPWLGGFGGKVFASDg-----vTPTLDTke--mVATLKFLHELkft 227 Spirochaeta the...
ADO77243     183 nti---dqdgdgladkyGLAYNln-----epFWWITFQGGFGGWVFDEEy------NPTLNTea--tVDALQFAHDLkyk 246 Halanaerobium p...
YP_001620653 196 wnaalasdgsgqtnaqkGWYYLgtsshwadsYFMQTFYSALGFQPFGENld----dPSAVGFad--aVAALTWFRDKlk- 268 Acholeplasma la...
NP_968138    160 mtv---dtngdgkidrwGLVFNyt-----epFFFAPFIPAFGEAFLKADgv---tpNLNTTAl----KDTFQFILKLrdq 224 Bdellovibrio ba...
2XD2_A       169 sk----yafagedgkttAFLADwt-----nfYYTYGLLAGNGAYVFGQNgkd--akDIGLANdg--sIVGINYAKSWy-- 233 Streptococcus p...
NP_342629    227 ---------vnktyhvwGIAYGagd---eygYRFAAWFAGFGGQIFTTNng---kiVPALNStamvnALNFWYNLTYnlk 291 Sulfolobus solf...
Feature 1                                          #                                             
1NL5_A       197 nkHMNADTdy-----sIAEAAFNKGetaMTINGPWawsnid-tskvnYGVTVLPtfkg--qpskPFVGVLSAGINAa--- 265 Escherichia coli
O06989       235 -tYWPKGMqdnssaddFIQQMFLEGkaaAIIGGPWsaanyk-eaklnYGAAPIPtlpng-eeyaPFAGGKGWVASKy--- 308 Bacillus subtil...
YP_001634133 243 ptVTFSTDg------gQADSLFKDGkadMIINGPWvlgdyravlgdnLGVAPMPgaakp-agplTGVDGFYVSINS---- 311 Chloroflexus au...
1URD_A       197 yhWMTPSTng-----sIAKAEFLAGkigMYVSGPWdtadie-kakidFGVTPWPtlpng-khatPFLGVITAFVNKe--- 266 Alicyclobacillu...
ADN01962     228 hgLLPPESdy-----dGADTLFKEGkaaMIINGDWslsgyreamgdkLGVARIPkvsatglwpaPYTSGKYFMIPKev-- 300 Spirochaeta the...
ADO77243     247 yqIVPKEAdd-----kMADSLFKDGdvaFIISGDWiidsyqqndnidLGVAPLPkfkktgkygqPMTSGKGFIMLRnl-- 319 Halanaerobium p...
YP_001620653 269 -pATTGNNnhn---svGAGANFVAGnipYIIAGPWnieeyagteglnFGIAPLPsvgg--vqgaPFAGAQMAAIYKy--- 339 Acholeplasma la...
NP_968138    225 dkIIPKECdy-----eTANALFKENkaaMLINGDWswgdyq-qakvdFGIARIPmisetgkwpsPLVGTKGYSLNAnmk- 297 Bdellovibrio ba...
2XD2_A       234 -eKWPKGMqdtegagnLIQTQFQEGktaAIIDGPWkaqafk-dakvnYGVATIPtlpng-keyaAFGGGKAWVIPQa--- 307 Streptococcus p...
NP_342629    292 vnYLAPSTga----ggAEGQLFVANqtaIIFDGPWdlnaylqalgpnLGAAPLPvvsqtglraaPFIGSTGFLVSSpqas 367 Sulfolobus solf...
Feature 1                                                                                     #  
1NL5_A       266 ---sPNKELAKEFLEnylltdegleavnkdkplGAVALKsyeee------------lakdPRIAATAENaak--geiMPN 328 Escherichia coli
O06989       309 ---tKEPELAEKWLEyaandana--yafyedtnEVPANTaarkka----------deqknELTSAVIKQyet--atpTPN 371 Bacillus subtil...
YP_001634133 312 ----QNVAGAVALAMfltspesm--kvyvdeagHVPVSTkve---------------isdPLVQAFAQAsat--gvpRPQ 368 Chloroflexus au...
1URD_A       267 ---sKTQAADWSLVQaltsaqaq--qmyfrdsqQIPALLsvqrss----------avqssPTFKAFVEQlry--avpMPN 329 Alicyclobacillu...
ADN01962     301 --sgAKLSAVVEFIKyatnydnq--irmvktlsRLPGLKaalddp----------likndPILKASADQmav--gtpMPS 364 Spirochaeta the...
ADO77243     320 ---sQEKQIAVLKFIdfmtdlaa--qelfvdsnFLPSNAqayqlp----------qiqndPIMKGSSKAlrn--grpMPV 382 Halanaerobium p...
YP_001620653 340 ---sNNKEAATAFLEflmsdkam--elqlkmknKLPALKpellpn----------idgfsTDPYLPAISlqlesaipMPT 404 Acholeplasma la...
NP_968138    298 --seAHYEAAVKLLKyltstpvq--llfaekvgVLPSNLqaresd----------ivknnPLLKISADImev--gtpMPV 361 Bdellovibrio ba...
2XD2_A       308 ---vKNLEASQKFVDflvateqq--kvlydktnEIPANTearsya----------egkndELTTAVIKQfkn--tqpLPN 370 Streptococcus p...
NP_342629    368 gatpLQIKAALLFVLyftnyqad--lrlwevahDIPANLqaynealtqlkegmlqptylnQIMEGILEQaqy--gqqFPN 443 Sulfolobus solf...
Feature 1               #  #                         
1NL5_A       329 IPQMSAFWYAVRTAVInaasgrqtVDEALKDAQTRI 364 Escherichia coli
O06989       372 IPEMAEVWTGAESLIFdaasgkksTQTSANDAVNVI 407 Bacillus subtilis subsp. subtilis str. SMY
YP_001634133 369 IPELDNYWGPFGDAMTkvldggadPAAAVAEACALM 404 Chloroflexus aurantiacus J-10-fl
1URD_A       330 IPQMQAVWQAMSILQNiiag-kvsPEQGAKDFVQNI 364 Alicyclobacillus acidocaldarius
ADN01962     365 VVEMRAVWDAMKPEMNavladqktPEEAAAAMQGAA 400 Spirochaeta thermophila DSM 6192
ADO77243     383 IPEMRGIWDAIRPALQsvmsddltPEAAAEQMQEEA 418 Halanaerobium praevalens DSM 2228
YP_001620653 405 IPAVQYYWGPGESMIIsvw---nnPATVISEAVVAA 437 Acholeplasma laidlawii PG-8A
NP_968138    362 TPEVRAVWDSLRIQYQkvlagslqPQAAAEQAQITA 397 Bdellovibrio bacteriovorus HD100
2XD2_A       371 ISQMSAVWDPAKNMLFdavsgqkdAKTAANDAVTLI 406 Streptococcus pneumoniae TIGR4
NP_342629    444 IPQMAYYWNSFHQYASeffankvnATQASQGMEQAF 479 Sulfolobus solfataricus P2

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