Conserved Protein Domain Family
RlmE

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COG0293: RlmE (this model, PSSM-Id:223370 is obsolete and has been replaced by 440062)
23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 223370
Aligned: 41 rows
Threshold Bit Score: 105.383
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6226708    1 MGKTqkKNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYgHFLEK--SKVVIDLCAAPGSWCQVASKLCPVNSl----- 73  baker's yeast
9910941    1 --------MYRLDDEYSKKAKREGYLARSVYKLIEINEKF-SLFSS---GNVLDIGASPGSFSQYAYKKLKRGi------ 62  Lyme disease spiroc...
19173214   1 ------MDGEEKRDVYYRLAKKNKYRARSVYKLMHIDEEH-DIFRD--VEGVVDLCAAPGSWSQYASEKLLKRNrg---- 67  Encephalitozoon cun...
15669443 161 defnelvieeniknlknlkryierplNRSERKMQELMEKFpFIFEN--INCVVDIGSSPGGWAKMLSKKAKK-------- 230 Methanocaldococcus ...
20093782 157 svvppdlivskevkrvrkwspgmrpiSRAQLKLRELLKRHpYIVRE--GSDVIDLGAAPGGWSYELARRVEPG------- 227 Methanopyrus kandle...
9910977    1 MGRS----SKDKRDAYYRLAKEQGWRARSAFKLLQLNEQF-NLFEG--AKRVVDLCAAPGSWSQVLSRELLKNIdtsiaa 73  fission yeast
9910943    1 ------MNVYKRADFWAKKAAAAGYRARSVYKLAALDKKY-SLLSR--ASRVLDLGAAPGSWTQYVLGTAAACTa----- 66  Treponema pallidum
13541120   1 -------MTGDRRDEYYWKAKKEQLRSRAAFKLEFLLDRY-RVVRK--GDAVIEIGSSPGGWTQVLNSLARK-------- 62  Thermoplasma volcanium
16082347   1 -------MSSDHRDQYYWRAKRDQFRSRAAYKLEFLIERY-GIIKD--GQAVLEIGSSPGGWTQVLVDHGCR-------- 62  Thermoplasma acidop...
586500     1 MGKS----SKDKRDLYYRKAKEQGYRARSAFKLLQLNDQF-HFLDDpnLKRVVDLCAAPGSWSQVLSRKLFDESpssdk- 74  baker's yeast
6226708   74 -----IIGVDIVPMKPMPN---VITFQSDITTEDCRSKLRGYMKTWK---ADTVLHDGAP----NVGLGWVQDAFTQSQL 138 baker's yeast
9910941   63 -----LVSVDINDIGLRYDd-nFYFIKGDIFLDDTVFKINTFKPY------SLVISDVAP----KTTGNRLVDTSNSFNL 126 Lyme disease spiroc...
19173214  68 ---arIVSVDIQDIVPIEG---VMCIKDDITSASCLEKILEVLGRPA----DLVICDGAP----DITGIHEIDEYLQIEL 133 Encephalitozoon cun...
15669443 231 -----VYAIDTGELKIKANn--IIHIKKRAENVDFEKDINEEIDLIT----NDTN--LYP------------DESLFLTL 285 Methanocaldococcus ...
20093782 228 ------TVYAVDPGDLHPK---VLKLDNVVHLKKRAEELTEDDIEGR---IRLVTSDLNRihteATEVTLSVADEFLEPG 295 Methanopyrus kandle...
9910977   74 dekpmIVAVDLQPMAPIDG---VCTLQLDITHPNTLSIILSHFGNEP---ADLVVSDGAP----DVTGLHDLDEYIQAQI 143 fission yeast
9910943   67 -----VCAVDVQPIASDIQdarLQRVQGDLCAADTRARVACNAPF------DLILSDAAP----RTTGNRTVDTSASACL 131 Treponema pallidum
13541120  63 -----IISIDLQEMEEIAG---VRFIRCDIFKETIFDDIDRALREEGiekVDDVVSDAMA----KVSGIPSRDHAVSYQI 130 Thermoplasma volcanium
16082347  63 -----VVAVDIQPMDEIPG---VIFLKLNILREDAAERIREEMARSLvqrFDVVLSDAMA----KTSGIRSSDHAASVMI 130 Thermoplasma acidop...
586500    75 -edrkIVSVDLQPMSPIPH---VTTLQADITHPKTLARILKLFGNEK---ADFVCSDGAP----DVTGLHDLDEYVQQQL 143 baker's yeast
6226708  139 TLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASRNVSA-EIFVVCKGFKAPK 206 baker's yeast
9910941  127 SMRIIDLSLEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPKAVRKNSF-EIYFLGKSFGK-- 192 Lyme disease spirochete
19173214 134 LKSALATSLRVSRPGSSFVGKYLRGECTPYIAGHFRKFYGGVTLLKPKASRTDSM-ECFLYCTGMKDTG 201 Encephalitozoon cuniculi
15669443 286 KFAKHLKTNGYIIHTLKARNLKTKKEDLEKVLKILS-YYRNIKIFKIINLRANTKnELTLILKKV---- 349 Methanocaldococcus jannaschii
20093782 296 GFIVQTVKLAVDPSTGEYAAPDVETAVSEVELEYERRGYEILAIERLKRNTPNER-TLVARKV------ 357 Methanopyrus kandleri AV19
9910977  144 LLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSI-ESFVVCEDFNPPS 211 fission yeast
9910943  132 AAGVCAYVN-FLSSDGGLVFKVFQGSEHLAILTHLRAHFGAVCSFKPPASRPRSC-ELYVVARFFRGTC 198 Treponema pallidum
13541120 131 GQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSS-EIYIMFFGFKAP- 197 Thermoplasma volcanium
16082347 131 GNAVMKIAMDTLRRGGVAVVKQFQGDMTGDFIKNWGHYFRDHRITKPPASRKESS-EVYIIFYGFSGKE 198 Thermoplasma acidophilum
586500   144 IMSALQLTACILKKGGTFVAKIFRGRDIDMLYSQLGYLFDKIVCAKPRSSRGTSL-EAFIVCLGYNPPS 211 baker's yeast
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