Conserved Protein Domain Family
PBP1_ABC_sugar_binding-like

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cd19966: PBP1_ABC_sugar_binding-like 
monosaccharide ABC transporter substrate binding protein CUT2 family and simialr proteins
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Statistics
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PSSM-Id: 380621
Aligned: 17 rows
Threshold Bit Score: 285.758
Created: 26-Jun-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic transport protein receptor for D-glucose and D-galactose

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #                                                                  
GAP05366   54 RIVFFPggpqggvFAVNVYNGARQAEadlGPKVDYVWsdw-dpQKMIQQFTEAAAtKPDGIAVMghpgdeafDPLIEDAI 132 Anaerolinea thermo...
EPH09605   22 SVYFDAggsagdnFGTVISNGAKAAAkdlGVDLKVYYsdw-dpNKMVENFKTYSAtMPDGMVIMghpgddlyKPLVDKAV 100 Campylobacter ureo...
OYT62986   35 VIYWIGgae-gdpFDARLVKGATDAAnllGITLRYVHtnw-dpERMIAEFKKAIAaKPDGIVVMghpgygalAPLFEEAA 112 Thermofilum sp. ex...
OYT54957   42 VIYWIGgaa-gdpFDARLYKGATDAAellGIKLVYVHtkw-dpDKMVAEFKKAIAaNPDGIVVMghpglealEPLFKEAA 119 Desulfurococcales ...
EFB91827   39 TVWFDAggsvgepYATTVVNGAKQAAidlGVDLKIVYsdw-npEKMLENFKTGLAaNPTGFVVMghpgddayEPLIDEAF 117 Pyramidobacter pis...
ODS36580   37 YFRLVThgg-ddpFWAVVQKGMLDAVkelGCQADIDLcgg-dlALQQKRFQEAVAmRPDGIALVinddkawdKPVADALA 114 Candidatus Altiarc...
NP_053336  45 KIVHIGvaa-ptgFFAYLNKGAEDAAkdlGVDFTYIFpstptlPAQVETITAAIAgGADGIIINgigddksyYDVIEQGK 123 Agrobacterium tume...
EKX60857   64 KVTFLLpqdpgdpFWTTIAQGAKDAAqllNLDLNMQTssg-dqSKYNDLIGSAVAdKPAALAVVlddp-nkyTENVCAAQ 141 Streptomyces ipomo...
KQY00520   29 KATMIIyldpsvqFFNPVVKGAQDAAaqfGVDLDVQYann-dpVRQNDLIESATAsGVDGIAVAisss-dafDESICKAV 106 Rhizobium sp. Root...
ABM59151   30 KIYLMThgsdadpMWIEWNRGAIAACakiHAKCHISFhsn-nvSSQKEAFNSAIAaRADGIATTsaep-kiwNKEVAAAT 107 Verminephrobacter ...
Feature 1              #                                                                   #  
GAP05366  133 SkGIIVTSQNtmlpkmea---kyaskgfgYVGQDLYGAGHALGAEAVkrf-----glkAGDRAMVWGLl-SQPARGERTK 203 Anaerolinea thermo...
EPH09605  101 KnGIVVTSIDtplkktqe---nnavsgfgYAGSDNYSAGLSMANEAIrff-----dlkKGDKVMIWGLl-SQPTRGLRAK 171 Campylobacter ureo...
OYT62986  113 KkGILVTLANvdvpklr-----ekywfcgYVGQNLYRSGYILAKEAIkry-----hlkKGDRAVIFSGswEQPARALRAI 182 Thermofilum sp. ex...
OYT54957  120 DkGILVTLANvdipelr-----ekywftgYVGQNLYMSGYTLAKEALkryg---dklkPGARAAIFSGswEQPARALRAI 191 Desulfurococcales ...
EFB91827  118 AkGMIVTCVDtalprlqg---kyqargfgYVGTDNWRQGAEMAREILrrg-----glkQGDRAFVWGLk-RLEGRGRRAR 188 Pyramidobacter pis...
ODS36580  115 K-GINVIGMNnddgkga-----ggnarlcYIGQGDRRAGYVIARRLFktaknkgwdlrNAHVGAAVEVp-GANYGVQRSQ 187 Candidatus Altiarc...
NP_053336 124 AqGIAFGSALgpqagngtqlrdlndpflfHVGADEYAGGVTIAKKLLet-------ikTGHVVVGNPQpgDSATCQPRAA 196 Agrobacterium tume...
EKX60857  142 KaGIPVMTYNitqegav------gdctlgFVGQDFEEVGYLLGKRLLadhp----digKGDTVLTPVEfpDQVYAVQRHA 211 Streptomyces ipomo...
KQY00520  107 KaGIIVIGFNnddldga-----kgncrqaYVGMDEFASGYELGNRMVeqf-----glkEGDMVFNPREipEASFAVARGG 176 Rhizobium sp. Root...
ABM59151  108 KaGIPVVFFNsddpa---------agrysYVGADLFQAGVIWAKYLVdnk-----vvkAGDKVFLPVEaaGATYQVLETK 173 Verminephrobacter ...
Feature 1                                                                                 #   
GAP05366  204 GVIDAlkeAGLTVDYLEIDAATnkdpAAGTPTFTGYVSshpdvkLVVTdhgglTATMETYLKAAgkgpddIIGIGFDLSp 283 Anaerolinea thermo...
EPH09605  172 AMIEVlenAGMKVDYIEISPEInkdpTLGQSVFGAYVAknpdlkVAFIdhgslTATMAQIMKNLnidkdkIGIAGFSLSp 251 Campylobacter ureo...
OYT62986  183 GCEDAlkeAGLIVDRVSHPPSVygnpAEGIPYVVGYYTahpdvkLMVFdgggtTAAVEEYIKAIhkkpgeIICIGFDLTp 262 Thermofilum sp. ex...
OYT54957  192 GVEDAlkeAGLVVDRVSHPPEVygspAEGLPYVSGYLAkhpdvvLMCFdgggtTAAAADYMKSLgkkpgeIIVIGFDLTp 271 Desulfurococcales ...
EFB91827  189 ALLEEfgkAGLTVDYLEISDEInkdaALGAPVLSGYLAshpdckVIVVdhgglTGQLGNFLRAAgvkpgeIYATGFSLTp 268 Pyramidobacter pis...
ODS36580  188 GVKDAmkeYGIMTKMDIIDAGGle-mTTVESRMTSYLIahpetkFLFGlggicTDRLTSSLKNAgkkpgeIIAGGFDTAp 266 Candidatus Altiarc...
NP_053336 197 GVIDTlkaANLTAEVQELTLDP----GQIAETMTNYLRahp-dtRAMIsacspIAPYLEAKERAgl--sdLVLAGWDLDe 269 Agrobacterium tume...
EKX60857  212 GVERAldeVGAKTEILGTGIED----SAALDKITQYLLghkdtaAVVPlggtpHRNVVKAMEDSgv---kVPVVGFDLAp 284 Streptomyces ipomo...
KQY00520  177 GIEKAmkeHGIKVETVKSGLDP----AEAQNILAQFLIanpntkALFGtgsvtSTVGAGAIKDAgv---nIPFGGFDLAv 249 Rhizobium sp. Root...
ABM59151  174 GVASVfdpLGIKYSVLEVGSEP----ASLITRMTEYLTanrdvkAIIGlgdlvTAHSRAALKNIgakpgqIPVVGWGYSk 249 Verminephrobacter ...
Feature 1                     #                                  
GAP05366  284 atvtairggWTDLVIDQQpWLQGYLPILQICltkvy-gfsgLHIDTGGGFA 333 Anaerolinea thermolimosa
EPH09605  252 atlagiksgYVDIIGDAQpYFQGYFSVLQIYmskky-gfsgFSIDTGGGFV 301 Campylobacter ureolyticus ACS-301-V-Sch3b
OYT62986  263 gsvkairdgYLQLIIDQQpYLQGFLTVLNLFlskky-gfagLYIDTGGAII 312 Thermofilum sp. ex4484_15
OYT54957  272 gsvkgleegYVQLVIDQQpYLQGFLTVLNLFlskky-gfagLYIDTGGAVI 321 Desulfurococcales archaeon ex4484_217_2
EFB91827  269 atvgaieagYLNLTSEAQpYLMGYLSVLQIVntaky-kfggLNVDTGGGYI 318 Pyramidobacter piscolens W5455
ODS36580  267 gtlgglksgHIEATIDQQqYLQGYYAVYTLHlmkk--ygfaPNIDTGGYLV 315 Candidatus Altiarchaeales archaeon WOR_SM1_79
NP_053336 270 ngvaalksgKLNFTIDQQqYWRGYIPVLLMThylkyglipaNAFLTGPAIV 320 Agrobacterium tumefaciens
EKX60857  285 qivtgiesgAIDAAADQQgYVQGFQTVMELGlkldf-glspASINSGGSGL 334 Streptomyces ipomoeae 91-03
KQY00520  250 eivnavesgAMFATMDQQpYLQGYYPIAQIAlakky-gltpTDVDTGQGAF 299 Rhizobium sp. Root1334
ABM59151  250 dtaeavmegYAMAGLWQFpYDLGYLPVMIVDglaka-ggkgYDITTLDLYD 299 Verminephrobacter eiseniae EF01-2

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