Conserved Protein Domain Family
PRK00050

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PRK00050: PRK00050 (this model, PSSM-Id:234597 is obsolete)
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
Statistics
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PSSM-Id: 234597
Aligned: 854 rows
Threshold Bit Score: 341.288
Created: 9-Dec-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
58584368    1 MAHIPVLLKEMLLQLS-----P---QN-----GGIYVDATFGAGGYSKAILESAd-CKVYAIDRDKTVIKFY-EDlnik- 64 
119026127   6 TIHQPVLLRDCVDLVA-----PalaKP-----GSIAVDCTLGLAGHSTAFLKASpnARLIGIDRDTEALALAtKRmemeg 75 
283456404   6 TIHQPVLLRECVDLVA-----PalaKP-----GAVAVDCTLGLAGHSTAFLKASpeARLIGIDRDVEALALAtrrmeqeg 75 
189439036   6 NIHLPVLLDDCVNLMApalehE----------NAIAVDCTLGLAGHSIAFLKAApqARLIGIDRDSEALGLAtermereg 75 
219683269   6 QIHKPVLLQECVDLVT-----PalhAS-----DSVAVDCTLGLAGHTIAFLKAApnATVIGIDRDEEALDKAtariaqeg 75 
241196636   6 QIHKPVLLQECVDLVT----------PalhasDSVAVDCTLGLAGHTIAFLKAApnATVIGIDRDEEALDKAtARiaqeg 75 
241191230   6 QIHKPVLLQECVDLVT----------PalhasDSVAVDCTLGLAGHTIAFLKAApnATVIGIDRDEEALDKAtARiaqeg 75 
28493187    2 NGHLPVMLGEVCQLIE----------PvlgigD-VFIDATLGAGGHSEAILMSSqgALLYGIDRDAYALALArKRlsg-- 68 
283783556  10 AIHAPVLLQDCVDLVT-----PslqHK-----GAIVVDCTLGLAGHATAFLKAApfATLIGIDRDSEALSLAtQRmrseg 79 
23465877    6 NIHLPVLLDDCVNLMApalehE----------NAIAVDCTLGLAGHSIAFLKAApqARLIGIDRDSEALGLAtermereg 75 
58584368   65 ypsRVKLFIEKFSNIRSILDsnsleylvepsavsklsSIissgiqkkniwisasstgvtpsnTVDGVVFDIGVSSMQLDD 144
119026127  76 ladRFTPVHAAFDDFSQVLSdqg-------------------------------------vdKVNAVFMDLGLSSLQIDE 118
283456404  76 laeRFIPVHAAFDEFAHVLEdrn-------------------------------------idVVDAVFMDLGLSSLQIDE 118
189439036  76 ladRFIPVHAAFDQLDQVLAdqd-------------------------------------ieRVDAVFMDLGLSSLQIDE 118
219683269  76 lsaRFVPVHAAFDQFDEVLRaqg-------------------------------------vsRVQAVFMDLGLSSLQIDE 118
241196636  76 lsaRFVPVHAAFDQFDEVLRaqg-------------------------------------vsRVQAVFMDLGLSSLQIDE 118
241191230  76 lsaRFVPVHAAFDQFDEVLRaqg-------------------------------------vsRVQAVFMDLGLSSLQIDE 118
28493187   69 fadRCKFVHDTFDKFDKYLS-----------------NL-----------------------HPKVFLFDLGMSSMQIDN 108
283783556  80 lenRFIPAHAAFDEIDEVLQens-------------------------------------idRIDAAFMDLGLSSLQIDE 122
23465877   76 ladRFIPVHAAFDQLDQVLAdqd-------------------------------------ieRVDAVFMDLGLSSLQIDE 118
58584368  145 GDRGFSFLHDGPLDMRMDnSSHTNASTFVNALREEEIANTIYNYGGERHSRRIARAIVNARkkktIKTTFELANIVRSVV 224
119026127 119 TERGFSYSHDAPLDMRMDvTQPLTAEQVLAEYSFADLVRIFRAYGEERFSKQIAREIVRRRetepLTTSGQLNRLVDEVV 198
283456404 119 TERGFSYSHDAPLDMRMDvTQPLTARQVLSEYSFADLVRIFRTYGEERFSKQIAREIVRRRetepLTTSGQLNRLVDEVV 198
189439036 119 TDRGFSYSHDAPLDMRMDvSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRdkepFTTTAQLNRLVDEVV 198
219683269 119 RERGFSYAHDAPLDMRMDtSQALTAREILATYDADRLAHIFKEYGEERFSKPIAKRIVQQRqsspLETSSQLTALVDAVI 198
241196636 119 RERGFSYAHDAPLDMRMDtSQALTAREILATYDADRLAHIFKEYGEERFSKPIAKRIVQQRqsspLETSSQLTALVDAVI 198
241191230 119 RERGFSYAHDAPLDMRMDtSQALTAREILATYDADRLAHIFKEYGEERFSKPIAKRIVQQRqsspLETSSQLTALVDAVI 198
28493187  109 PDRGFSYMKSGPLDMRMNeSDKITAKEILNGYSETALIRIFRDYGQERYAKRIARQICKARsvseLVTTCQVSQLIRDVC 188
283783556 123 TDRGFSYSHDTALDMRMDtTQATTAATILATYDSRELTRIFREYGEERFASPIARRIVEVRatepIATSGQLVSLVDSVI 202
23465877  119 TDRGFSYSHDAPLDMRMDvSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRdkepFTTTAQLNRLVDEVV 198
58584368  225 ---FRGkSKIDPATRTFQAIRIWVNDELGELEKGIKAASEILNKNGKLIVVTFHSLEDRIVKTFF----KSLCepr---- 293
119026127 199 pq-aHR-PAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVESYHSLEDKTVKAFM----NQglkvdapad 272
283456404 199 pq-aHR-PAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVESYHSLEDKTVKTFMaqglKAdvpadm--- 273
189439036 199 pq--aHrPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVESYHSLEDKTVKSFM----AQglrvdvpag 272
219683269 199 pa-aRR-GSGNPAKRVFQALRIEVNGELDKLRRTLPQIGLHLAVGGRLVVESYHSLEDRTVKNFMaqglRVDApadmp-- 274
241196636 199 pa-aRR-GSGNPAKRVFQALRIEVNGELDKLRRTLPQIGLHLAVGGRLVVESYHSLEDRTVKNFM----AQglrvdapad 272
241191230 199 pa-aRR-GSGNPAKRVFQALRIEVNGELDKLRRTLPQIGLHLAVGGRLVVESYHSLEDRTVKNFM----AQglrvdapad 272
28493187  189 pphI---RKGHPAKRVFQALRIEVNSELLFLRTALEKALDLLQVGGRIVVLSYHSLEDRIVKHLF----RSvsvsqlpkg 261
283783556 203 pk-aHR-ATGNPAKRVFQALRIEVNGELDKLSRTLPKIALHLREHGRLVVESYHSLEDTAVKRFM----NQgltvdvpan 276
23465877  199 pq--aHrPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVESYHSLEDKTVKSFM----AQglrvdvpag 272
58584368  294 -----siDCKVFSLLNKKMIKASAEEVNANPRSRSAKLRAIQRLS 333
119026127 273 mpvvppdmmPFFKELTRGAIKADAEEIANNPRSASVRLRAVELTR 317
283456404 274 -pvippdMQPFFKELTRGAIKADETEIAMNPRSASVRLRAVELIR 317
189439036 273 lpvippdaQPFFTDLTRGAIKADEHEIAANPRSASVRLRAVEVSR 317
219683269 275 --vippdMQPFFKALTKGAVKADAGEIAYNPRSASVRLRAVELTR 317
241196636 273 mpvippdmQPFFKALTKGAVKADAGEIAYNPRSASVRLRAVELTR 317
241191230 273 mpvippdmQPFFKALTKGAVKADAGEIAYNPRSASVRLRAVELTR 317
28493187  262 ---fyinkdpeYKLIGKDLKNPKETEIANNPRASSAHLRAVERVH 303
283783556 277 mpvipddAQPFFKALTRGAMKASKEEIVHNTRSSSVRLRAVELCR 321
23465877  273 lpvippdaQPFFTDLTRGAIKADEHEIAANPRSASVRLRAVEVSR 317
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