2HF6,3TJZ


Conserved Protein Domain Family
Zeta-COP

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cd14829: Zeta-COP 
Click on image for an interactive view with Cn3D
zeta subunit of the F-COPI complex
Zeta subunit of the heterotetrameric F-COPI complex, which consists of one beta-, one gamma-, one delta-, and one zeta subunit, where beta- and gamma- subunits are related to the large adaptor protein (AP) complex subunits, and delta- and zeta- subunits are related to the medium and small AP subunits, respectively. F-COPI forms a coatomer together with the B-COPI subcomplex, which assembles with a small GTPase, ADP-ribosylation factor 1 (ARF1), playing an important role in the formation of COPI complex-coated vesicles. COPI complex-coated vesicles function in the early secretory pathway mediating the retrograde transport from the Golgi to the ER, and intra-Golgi transport.
Statistics
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PSSM-Id: 341433
Aligned: 37 rows
Threshold Bit Score: 176.968
Created: 4-Dec-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
COPG1
Conserved site includes 31 residues -Click on image for an interactive view with Cn3D
Feature 1:COPG1 heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:3TJZ, Bos taurus coatomer subunit zeta-gamma dimer, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                # ###                                         #   #                  
2HF6_A     14 KAILILDNDGDRLFAKYYddt---------------------------------ypsVKEQKAFEKNIFNKThr----td 56  human
3TJZ_C     14 KAILILDNDGDRLFAKYYddt---------------------------------ypsVKEQKAFEKNIFNKThr----td 56  cattle
EPB83376   10 KAVILLDAEGNRVLAKYYgge---------------------------------nttLKQQKQFEKGLFDKTkr----aq 52  Mucor circinelloid...
EJD08180   10 TAFLILDSDGHRVLAKYYrpksspyg------------------------elkglntVKEQKAFEKGLWEKTkk----ag 61  Fomitiporia medite...
EGU11677    3 TAVILIDNDSNRVLSKFYqpahpdpknp--------------------nafkhpfqtLKEQRAFEAAIWEKTrr----qn 58  Rhodotorula glutin...
EFP84588   10 TAVILLDSDGHRLIAKYFdpphignpsannneankkgpsphglsqlgfsgfgsqlrtLKDQRAFEHTIWDKTrk----st 85  Puccinia graminis ...
EEY57872   10 KAIFILDSDGNRVCAKYYdks---------------------------------yptQKEQLALEKKLYAKTknsnarle 56  Phytophthora infes...
EOO03250   11 NAIIILSLDGSRIFAKYYtaphhaptpagq---------------tstpssnspypdVKSQKAFEKGLLEKTak----qt 71  Togninia minima UC...
EPS35614   11 NAVLILDQDGNRVLAKYYsaphptgpg---------------------epgsnpyptLKEQQTFEKDLHAKThk----qs 65  Dactylellina hapto...
EMR10802    9 HAILILDSSGERIFAKYCqpphsvfqtg--------------------tarsnlystVKNQKAFEKGLWEKTkk----tn 64  Pneumocystis murin...
Feature 1      ## #                     # #####  #                      #  ##  ##  ##  ## ####
2HF6_A     57 SEIALLegLTVVYKSSIDLYFYVIGSSyENELMLMAVLNCLFDSLSQMLrknvEKRALLENMEGLFLAVDEIVDGGVILE 136 human
3TJZ_C     57 SEIALLegLTVVYKSSIDLYFYVIGSSyENELMLMTVLNCLFDSLSQMLrknvEKRALLENMEGLFLAVDEIVDGGVILE 136 cattle
EPB83376   53 GEVILYdnQVVLYRSNIDIFFYVVGSMeENELILLSMLNAFYDAVSTLLryqvEKRSVMDNLDLVILCLDETVDGGIILE 132 Mucor circinelloid...
EJD08180   62 GDVILYdgRLAVYKHSPDLIFYIIGNAdENELMLSLALNSFYDALSVLLrnqiEKRAVLENYDLVMLCLDETVDDGVIVE 141 Fomitiporia medite...
EGU11677   59 GDILLYenQLVLYKQSIDLTFYIVGPAgENELMLQGVLTGFYDAVAMLLrhqvEKRSILENLDLVVLALDETIDNGIVLE 138 Rhodotorula glutin...
EFP84588   86 GDILLIqnHLVLYKSIIDITVYVIGQEgENELMLQTLLNSFFDTLSLLLrnqvEKRAVLENLDLVSLCLDEMVDDGIILE 165 Puccinia graminis ...
EEY57872   57 ADIVLIenIVSVFRCGSDTTMHVVGSAsENELILLTVLDSAFDAVSNLLkgrmDRHVMLDNIELVLLTFDEVVDGGIILE 136 Phytophthora infes...
EOO03250   72 GDILLYdgRIVTYKTESDVMMYLVSSIdENEILLYQSLLCLRDSLHLLFkqsvDKRTIIENYDLVSLAIDEIVDDGIILE 151 Togninia minima UC...
EPS35614   66 NDIILFdnRIVVYKPESDVTLYIIGSLsENEILLYNVVLALRDALSILLknttDKRTIIENYDMVSLAIDEIVDDGIVLE 145 Dactylellina hapto...
EMR10802   65 NEIILYenYMVVYKTSIDITMYIVGGQdENELMLYELLTTLKETLEILLkmliDKHALLENYDLLSLVVNEICDDGIIVE 144 Pneumocystis murin...
Feature 1     #       #
2HF6_A    137 SDPQQVVHR 145 human
3TJZ_C    137 SDPQQVVHR 145 cattle
EPB83376  133 TDSNAIVSR 141 Mucor circinelloides f. circinelloides 1006PhL
EJD08180  142 TDSTTIASR 150 Fomitiporia mediterranea MF3/22
EGU11677  139 TDPVAIASR 147 Rhodotorula glutinis ATCC 204091
EFP84588  166 TDSVAIASR 174 Puccinia graminis f. sp. tritici CRL 75-36-700-3
EEY57872  137 VDTPSISNR 145 Phytophthora infestans T30-4
EOO03250  152 TDPTIVVQR 160 Togninia minima UCRPA7
EPS35614  146 TDPNAIASR 154 Dactylellina haptotyla CBS 200.50
EMR10802  145 TEPTVIASR 153 Pneumocystis murina B123

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