4ZPU


Conserved Protein Domain Family
endolysin_R21-like

?
cd16900: endolysin_R21-like 
Click on image for an interactive view with Cn3D
endolysin R21-like proteins
Unlike T4 E phage lysozyme, the endolysin R21 from Enterobacteria phage P21 has an N-terminal SAR (signal-arrest-release) domain that anchors the endolysin to the membrane in an inactive form, which act to prevent premature lysis of the infected bacterium. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
Statistics
?
PSSM-Id: 381619
Aligned: 83 rows
Threshold Bit Score: 133.837
Created: 21-Jul-2016
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
catalytic
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: catalytic residues [active site], 3 residue positions
Conserved feature residue pattern:E D TClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                    #           #        #                              
4ZPU_A        15 GGAIAIasv--------litGPSGNDGLEGVSYi---PYKDIVG---VWTVCHGHTGkd---iMLGKTYTKaECKALLNK 77  Escherichia col...
KEA07473      25 SGSVALfpgqppvhddtalaVQTLVQPWEGRSLk---AYLDTIPkhpVWTICDGDTDn----vKAGMVETPaGCNKRVAV 97  Agrobacterium r...
ADH87371      41 PAAVVLa-------------AEHIIKGWEGLRLi---AYRDIVG---VWTICYGETKg----vRAGMRKTAaECEALLYE 97  Starkeya novell...
EJC75576      38 PAAVILa-------------TETLIKPWEGLVLk---SHWDPYAk--IWDICHGETQidgkpvKPGMTFTAaECEAILEA 99  Rhizobium legum...
WP_029074423  14 LGVVALt-------------AAYLTVPWEGVENa---AYWDAIGk--AWTVCAGETKg----vKPGDSYTDkQCIDMLHR 71  Kaistia adipata
WP_029073586  34 PDDVALa-------------AQFLVKPWEGRELr---AYPDPATggaPWTICDGDTKg----vKPGMQETPaGCDRRLVR 93  Kaistia adipata
EKF43960      15 AALLAS--------------AIAFYSSWEGREYv---AYLDSGG---VWTICDGHTGpe---vKKGMRATDaECDAMLRK 71  Nitratireductor...
CDM57209      13 AAVALS--------------IGSLIKPWEGLSLs---SYPDIVG---VWTACYGETLg----vRPGQKFTRaECDEKLLT 68  Rhizobium sp. L...
WP_012496213  13 SAAGAMf-------------AAILFGHWEGMSLvarhLPFDPPG---VITVCGGITNydwpwlKVGMKFTEhECIKAQAD 76  Rhodopseudomona...
WP_013502252  27 AAGLAL--------------AIAMFMHWEGVSYvakqLPFDPPG---VITVCGGITNhdwpwlKAGMKFTPeECREAVAQ 89  Rhodopseudomona...
Feature 1                                                                                        
4ZPU_A        78 DLATVARQINPyi----kVDIPETTRGALYSFVYNVGAGNfr--------tSTLLRKINQGDIKGACdQLRRWTYAGGkq 145 Escherichia col...
KEA07473      98 KMERDYRAPVVkci-gdwDKKPLSWRAMILSLSWNIGVGAac--------nSTAARLGRAGEYEQSCkAATAFNKAGGrv 168 Agrobacterium r...
ADH87371      98 RVYRDFYIPMSacaapafVQAPVPVQAAMLGGGYNFGVGGwc--------gSTTARYIRAKLWRQACdAQTAWNRAGGkv 169 Starkeya novell...
EJC75576     100 RVKRDYYGPLTkqi-kgfTGFPIGVQASMISGAYNFGVSGmv--------nSTAARLAKQGRYREACeAQTAWNKAGGrv 170 Rhizobium legum...
WP_029074423  72 RMERDYRQPLQrci-rgfDAAPLSVQASFLDLSWNVGVSAvc--------rSTAARRAMAKDWPGACeAMTWFNRASGrv 142 Kaistia adipata
WP_029073586  94 RMGEFRGQLVAcvp--gfAGKPLSWRAMMNSLAYNIGTGAac--------rSTAARLGAAGRFVDSCnAATAFNKASGrv 163 Kaistia adipata
EKF43960      72 DILAHERRMLAcvp--elRNAPDDTYIAINSWAFNAGTGAac--------rSKLVRKIKAGDLRGACgELSRWVYVKRkv 141 Nitratireductor...
CDM57209      69 RVMNDYYVPLTgci-adfDRKPVEWQAAAISVTYNVGVGAac--------kSTFARLARENRMKDSCqAMTAFNKAGGrv 139 Rhizobium sp. L...
WP_012496213  77 AMQRYGAQVAAcvp--glADMPPHRQAALASFAGNLGAGKicnrtdrykrnPSIAENLNAGRVREACdAMVKFVYANGtf 154 Rhodopseudomona...
WP_013502252  90 LVPRYAEKVRAcvp--sfETMPPHRQAAITSFVINLGPGRvc--------nSSIGPDLEAGRIRQACdAMRKYVYANGky 159 Rhodopseudomona...
Feature 1                        
4ZPU_A       146 WKGLMTRREIEREVCL 161 Escherichia coli K-12
KEA07473     169 IIGIVRRREMGDAQRI 184 Agrobacterium rhizogenes
ADH87371     170 VQGLVNRREMGDASRI 185 Starkeya novella DSM 506
EJC75576     171 VQGLVKRREMGDAQRA 186 Rhizobium leguminosarum bv. trifolii WSM2012
WP_029074423 143 VRGLDLRRKEGDAHRI 158 Kaistia adipata
WP_029073586 164 FIGLVNRREMGDARRI 179 Kaistia adipata
EKF43960     142 VRGLVNRRVKGSPGRI 157 Nitratireductor indicus C115
CDM57209     140 VQGLVNRRAAELKLCL 155 Rhizobium sp. LPU83
WP_012496213 155 LQGLLNRRTDAMWGER 170 Rhodopseudomonas palustris
WP_013502252 160 LKGLDNRRNDPIWGER 175 Rhodopseudomonas palustris

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap