Conserved Protein Domain Family
Dam

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COG0338: Dam (this model, PSSM-Id:223415 is obsolete and has been replaced by 440107)
Site-specific DNA-adenine methylase [Replication, recombination and repair]
Statistics
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PSSM-Id: 223415
Aligned: 29 rows
Threshold Bit Score: 133.603
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
14590870   1 MAEPVLKWAGGKRQILHYIVSLMPSDYkdrRFHEPFFGGGAVTFWLEP----------------KEGTINDINPKLINFY 64  Pyrococcus horikoshii
15616565   9 YLKSCLNYTGGKHKLLGQIIPLFPENIn--NFTDLFCGGANVAINVNAkgvirgidkqkevirlFKTIKQSDKDEILQII 86  Bacillus halodurans
19705228 192 sVSSPFNYTGGKYKLLEQLQKLFKEEE---IFLDIFTGGANVGINSKSskiifndv-nakiislMEYIKNIDVEELLKKI 267 Fusobacterium nucle...
15645109  30 YIKAPLRYGGGKSLAVGLIVECIPNGVr--RMISPFIGGGSVEIACAAel-------------glEVLGFDIFDILVNFY 94  Helicobacter pylori...
15837537  37 RRRIVFGWYGGKFSHLDWLLPLLPKCH---HYCEPFAGSGAVLINRDAa---------------QVETYNDIDGDVVNFF 98  Xylella fastidiosa ...
15838404   4 KLPLPIPYQGSKRMLAPMIYPLLPSDVv--SFYEPFAGSAAMTLFVAHhg------------vtKRYVLGDTLEPIVDLW 69  Xylella fastidiosa ...
16122327   1 ---------------------------------------------------------------------------MVNLF 5   Yersinia pestis
17228647   1 MLKSPLRYPGGKSKAIKQIIEYLPESFh--EYREPFVGGGSVFIYLKQkf------------pdLKIWINDLNTELFLFW 66  Nostoc sp. PCC 7120
15611500  30 YVKAPLRYGGGKSLAVGLIVECIPNGVr--RVISPFIGGGSVEIACATel-------------glEVLGFDIFDILVNFY 94  Helicobacter pylori...
16332213  19 QVKSPLRYPGGKSKALRQILPHVPTQIk--EYREPFIGGGSVFLAIKQifg----------qhiNKYWINDLNFDLYCFW 86  Synechocystis sp. P...
14590870  65 IILRDYPEELIEDAKMHKNE------------REYYYRMRREYNklalsswfrdfvrrgfkveseqdRRNAIRLASLLLY 132 Pyrococcus horikoshii
15616565  87 NKIICDYSLSDTNKYGYSKYgcesgsglaaynKEHFLKLRQDyn---------------------nrMEDTIYYDLAFYL 145 Bacillus halodurans
19705228 268 DNIIVDYGLSNTMLYGYEYYscnsseglancnKEAFLKLREDyn---------------------kkLNKGIEDYNLLYV 326 Fusobacterium nucle...
15645109  95 QVLLKDKQALYNHLLSLEPTre--------tyNIIKQELKAHyk---------------------keCTLDPLILARDYY 145 Helicobacter pylori...
15837537  99 RVLRDRNEELIRVIALTPFSr-----------EEYHRAIYGTKN-----------------------GISDVERARRFYI 144 Xylella fastidiosa ...
15838404  70 ASIIEQTSKTAKRYSQVWHGqtt-------tsTDYFNRVRERYN--------------------------NEKDPVDLLY 116 Xylella fastidiosa ...
16122327   6 FVLRDMTLRECLIEALILTPys---------rDEFTDAYGEAET------------------------MVERARKLVIRA 52  Yersinia pestis
17228647  67 KIAQSDLSQLVKEIRRIKDKyq--------dgKLLFLELTTvd----------------------viSLSDLDRAVRFFV 116 Nostoc sp. PCC 7120
15611500  95 QALLKDKQALYDNLFSLEPNqe--------tySIIKQELKAHyk---------------------keCVLDPLILARDYY 145 Helicobacter pylori...
16332213  87 KYAQEEIERLTDAVTVIKQHqt--------dgRELFANLTke-----------------------glELDEFQRAVRFFV 135 Synechocystis sp. P...
14590870 133 LNKTAYNGLYRENRKGEFNVPFGRYK--NPR-----IVDEKRLREASRVLRN--LEIYNTDFSYVLDKAKEG-DLVYFDP 202 Pyrococcus horikoshii
15616565 146 LTVYGFNNQIRFNKKGHYNIPVGKRD--FNE-----KIKTN-LVNFIRIIKEkdIDFICSDFREVEI-EMSQgDFLYADP 216 Bacillus halodurans
19705228 327 LIVFSFNNQVRFNSKGEFNLPVGKRD--FNS-----KMRNK-LILFSKKLKEkdIEFYSKDFRDIDINKIPKnTFVYCDP 398 Fusobacterium nucle...
15645109 146 FNFNLSYGPGFL---GWMSKIYTDKQ--RYL-----NALLK-IKGFNAPSLK----VECSSFEEVLL-AYPNd-FFYLAP 208 Helicobacter pylori...
15837537 145 KARQTRTGLAQTASLGRWANCKDTSRagMSGvvsrwLGGVDALDDIAQRLIR--VQIENRPAVDVIRLYDSVnTLFYCDP 222 Xylella fastidiosa ...
15838404 117 LVCRCVKSAVRFNGGGWFTQSHDKRRlgMAP-----DKMSLAIEGASALLRGk-TKSRKGGWLEITSDATAR-DFVYMDP 189 Xylella fastidiosa ...
16122327  53 TMGFGSAGATKGTTGFRLDTKRGSAT--AQHl---wARMPENLAAVGQRFEG--VLVENRDAVQCMLDHDTVsTLHFVDP 125 Yersinia pestis
17228647 117 LNRITFSGTVES---GGFSQQAFQKR--FTH-----SSIER-LEKLENILTEd-IKITNLDYSQLLN-NEQNdVFIFLDP 183 Nostoc sp. PCC 7120
15611500 146 FNFNLSYGPGFL---GWMSKIYTDKQ--RYL-----NTLLK-IKDFNAPSLK----VECSSFEEVLI-AYPNd-FFYLDP 208 Helicobacter pylori...
16332213 136 LNRITFSGTVES---GGYSQQAFEKR--FTD-----SSIDR-LKTLGTMLAN--TTVTNGDYQQLIE-QPGEnVFIFLDP 201 Synechocystis sp. P...
14590870 203 PYQPISQTASFTDYSK----EGFTYKDQIRLRDVCLEL-HRRGVYFILSNS--SAPEIVKLYKDIPEfdIIIVKAKRVIN 275 Pyrococcus horikoshii
15616565 217 PYLISTAT--YNEQNG------WTEKEENDLLSLLDSLsEKGVKFALSNVMntKVK------------------------ 264 Bacillus halodurans
19705228 399 PYLITTAG--YNENGM------WTDKEEKDLLNFLKELdKKGLKFALSNVLesKNKENKILKDWILEnnFYCNYLKKDYS 470 Fusobacterium nucle...
15645109 209 LMC----------------------------------------------------------------------------- 211 Helicobacter pylori...
15837537 223 PYLHVTRG-DAKAYSF-----EMDEGQHREFAEVVNECkAMVAVSGYEHPL--MEELFKPERWFKTQgqEKTIHSTKGKR 294 Xylella fastidiosa ...
15838404 190 PYMGTSMGRD-KRYHQ-----QLMLDDLVAGLEAMNARdIRFALSYDGMTG--KKEYGPELPATLGMarLLLHAGRSSHA 261 Xylella fastidiosa ...
16122327 126 PYVHDTRVISSRYYRH-----EMDNDAHLTLLDTVNNLeGMVVLSGYNTDM--YNDILTGWQKQEKQ----SSAAGRKGS 194 Yersinia pestis
17228647 184 PYYSATKSRLYGKDGE-----LHTSFEHQRFAALLQQCpQRWLITYDNSPEirANFSSAHIYEWELQ--YGMNNYKQSGA 256 Nostoc sp. PCC 7120
15611500 209 SYVLENSKMFKGIYPMrnfpIHHNGFKHEVLAHMLKRHkGPFILSYNDCELvrNAYKDFKILEPSWQ--YTMGQGETRMG 286 Helicobacter pylori...
16332213 202 PYLSATKSKLYGKKGD-----LHTSFGHQRFAEVMENCsHKWLITYDDSEEirKLFSFAQIIEWDLQ--YGMNNYKQDKA 274 Synechocystis sp. P...
14590870 276 SKADRR-GPVDEILVTNVPR 294 Pyrococcus horikoshii
15616565     --------------------     Bacillus halodurans
19705228 471 NSNYQRkEKNSVSVEVLVTN 490 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
15645109     --------------------     Helicobacter pylori 26695
15837537 295 AEVLWTnYDPQKQSQKG--- 311 Xylella fastidiosa 9a5c
15838404 262 TLQGKVeKTIESLYLTIKCF 281 Xylella fastidiosa 9a5c
16122327 195 VKRLEClWLSPNVLSGSKAA 214 Yersinia pestis
17228647 257 AKGKELfISNYEIKHNLSKM 276 Nostoc sp. PCC 7120
15611500 287 KNRLERgDNNHVKQSHELLI 306 Helicobacter pylori J99
16332213 275 SKGKELmIKNY--------- 285 Synechocystis sp. PCC 6803
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