Conserved Protein Domain Family
COG5412

?
COG5412: COG5412 (this model, PSSM-Id:227699 is obsolete and has been replaced by 444167)
Phage-related protein [Mobilome: prophages, transposons]
Statistics
?
PSSM-Id: 227699
Aligned: 6 rows
Threshold Bit Score: 449.226
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
15616080  155 IAGTSLGEIGAILNKVTTSGRAYNSELQMLSDRGLPVYQWLAEEANTTADAIFDMASKGEISTDMLLNAIEKNIGGAAKI 234  Bacillus halodurans
15612575    1 ----------------------------------------------------------------------------MAIT 4    Bacillus halodurans
15613523    1 ----------------------------------------MDSLISFGKDLKKWSDSFT--------ETAKK-VGEFTKV 31   Bacillus halodurans
15927531  490 IFGGIAAAIGPVVFGLGAFISTVGNAVTVLAPLLASIAKAGGLISFLSTKVPILGTVFTALTGPIGIVLGVLAGLAVAFT 569  Staphylococcus au...
15675357  141 MADNSAKMGTDITSIQMAYQGFAKQNYTMLDNLRLGYGGTKEEMKRLLSDAEKLPAAMGKKFDLSNYADVVEAIHLVQDN 220  Streptococcus pyo...
16799245    1 -----MADSKKITFEMNES--VLTAQFSRLDEMASVVERRFSELKMTIEDVGN--ADPG--------SKITESLGGLQSG 63   Listeria innocua
15616080  235 MGEE--SFSAAIANIGADIARIGANFLDAGGKAGG---FFSTVKPLLTEFRGflaqveeqaadwgVAFGQAFNNVIDRVR 309  Bacillus halodurans
15612575    5 IG-----SSPGITLDFEKIQKDGKVFQDLASNLGN---IKTHIQEINENLANg-------------QFGTVFLGMVGTIG 63   Bacillus halodurans
15613523   32 NE----DSLKTIEAYGQKVAGIGESLSEGLSSAVN---TASEFEKTLSSVGK--------------MIGLSDDALGVFMP 90   Bacillus halodurans
15927531  570 IAYK--KSETFRNFVNGAIESVKQTFSNFIQFIQP---FIDSVKNIFKQAIS-------------AIVDFAKDIWSQING 631  Staphylococcus au...
15675357  221 MGIAgvAAEEAKTTFSGSLAAMKSSFTNVMAGLSLgddIRPALRGLAETTSN-------------FLFGNFIPMVANIFK 287  Streptococcus pyo...
16799245   64 LG----TISSAFGQLGSSSEAITSGFGTAVGSVGG---ITDAFKNLGSSVQ----------------NGTLFSSLSTGIG 120  Listeria innocua
15616080  310 ELKSWFDGLSPSVQTLITRAVaIGAGFLVGIGpalkvvgfLTTQFGSLLNITSLLLSPIGLVVVGITGLAVAFGVAMAKS 389  Bacillus halodurans
15612575   64 TLIVSFGLLVQSIEILKR-------VFVLLIG-----------SIAPLTIGLIKFIAIAGIIIAVVAGIAAGLMHLWKTN 125  Bacillus halodurans
15613523   91 KLHPIILAIVAIGAALVYAYN-EFEWFRDIVD--------TAWAKIEETITSATEAIWDILTEIFGQIMEIISPVIELIK 161  Bacillus halodurans
15927531  632 FFNENGISIVQALQNICNFIKaIFEFILNFVIkpimfaiwQVMQFIWPAVKALIVSTWENIKGVIQGAINIILGIIKVFS 711  Staphylococcus au...
15675357  288 GLPSAIGTFIGAAAPIITS---QFQGLMSSLG-----------ISIDLSPITAKFAQIGQNLQPVFNGLKTAFSQLPSFF 353  Streptococcus pyo...
16799245  121 GMSTMLGGVTGGVQGITN----LASGFMELKNhl----ggLMSSIGGVGGIMGKLTSPMGLVIIGIVALVAAFTYLMTTN 192  Listeria innocua
15616080  390 EEFRNLVFGVFQnlasiistviatvspilqtmwdgareglasfaetvggrlinafelivtvlqtvvvavtefvssfiqgf 469  Bacillus halodurans
15612575  126 EGFRDTVLTVWE-------------------------------------------------------------------- 137  Bacillus halodurans
15613523  162 EDFTEAGSVIID-------------------------------------------------------------------- 173  Bacillus halodurans
15927531  712 SLFTGNWRGVWDgi------------------------------------------------------------------ 725  Staphylococcus au...
15675357  354 TSIGSAVAPVID-------------------------------------------------------------------- 365  Streptococcus pyo...
16799245  193 ESFRNTVMSVVT-------------------------------------------------------------------- 204  Listeria innocua
15616080  470 qsaggevtslsslflgfnpvlsmallilqefgpQIAQGFSQIASMALPlltmlgqtlgeLAAAIIPMVMNVISALMPVVM 549  Bacillus halodurans
15612575  138 ---------------------------------TIQRVITTVLNEVVS-----------FISEKLEMIKQFWNEHGDAIK 173  Bacillus halodurans
15613523  174 ---------------------------------KFGEAFMFVADLISD-----------VITFISEVIMTGLTVIQEFLT 209  Bacillus halodurans
15927531  726 --------------------------------vMILKGTVQLIWNLIQl---------wFVGKILGVVRYFGGLLKGLIT 764  Staphylococcus au...
15675357  366 ---------------------------------TIISGLARLDFSGFEa----------LISAILPALQAGFSNFAAIVG 402  Streptococcus pyo...
16799245  205 ---------------------------------QVAQLFGQLVASLMP-----------IIMQIITAVMQIGAALMPIVM 240  Listeria innocua
15616080  550 SLGmtimdlamaiIPILIDVFSQLLPIITQLVTTFAGIIAQVAPLVTILVSSLVPVLMILIETVLNivQAVAPALIAILG 629  Bacillus halodurans
15612575  174 QA--------------VSNVFNAIWAVIQPIMDMILAIMQFVWPFVRELIIGVWNNIKGVIDGAL---SFIMGLIKTFTG 236  Bacillus halodurans
15613523  210 EHG-----------DTITAILIGAYEFIKEGIEFVISFIADIIEMVLDAISQFWEEHGQTIMDFAE--AAWETIKTVVSE 276  Bacillus halodurans
15927531  765 IIWva-------iIGVFKKSLSAIWNATKSIFGFLFNSVKSIFTNMKNWLSSTWNNIKSNTVGKAH--SLFTGVRSKFTS 835  Staphylococcus au...
15675357  403 PA-----------ISGVVDSFVGMWNAAQPLISILSDALMPVFQILGSFLGGVVKGALMGVSFAFDavKVAIQLVTPIID 471  Streptococcus pyo...
16799245  241 QF-----------ISFFAQLLAQLMPFINMLIAMLMPVIMQIVQVVMSLVSALLPSIMTVIQGIMSviQFLIPIIMKIAT 309  Listeria innocua
15616080  630 AVASAFDAIIPVVMAVLSTVVNVVANIISAISP------IVAFVAGIISSIISIISPIVTFIAGIISSIFSVISPITS-F 702  Bacillus halodurans
15612575  237 LFTGDFSLMWEGLKQMFMGALQFIWNLIQLWF-------VGRVLGILKVFIGRFIGPLKTMWSNVRGIFNTGLNAIRN-F 308  Bacillus halodurans
15613523  277 VINTVMEVVNQVLDRISELWDEHGETIMAIVKG------AFEFIKTIIGTVIDVIRERISTWLEAAKIIFDTVWPAISsI 350  Bacillus halodurans
15927531  836 LWNATKDIFIKLRNWMSNIWNSIKDNTVGIAGR------LWDRVRNIFGSMRDGLKSIIGKIKDHIGGMVDAVKRGLN-K 908  Staphylococcus au...
15675357  472 LLVQGLNFVQPVLSVIAEWIGVAIGMFGNLGTAgqglsaFIKSAWTNIQTAISTAGTIISTVIDYIKLAFSGAGSAVG-V 550  Streptococcus pyo...
16799245  310 VVVQIVVTIISYISKIMPIVMMIIGVIISIITT------IISYIVVIATTISNVIGKIISFIASVITSIIGIVQPIIG-F 382  Listeria innocua
15616080  703 VSGVFSTVFSIISGVFRNILGTVTSAIRTVSSIISSLSGVVSGVFNRIFSIASSIMNRVSSVITGVFNAIQSSWT-GLTS 781  Bacillus halodurans
15612575  309 FTNIFNSIRSTVG-----------TIMNSIRTTIQNGINAAVQVVMGFFSRFREAG---RNIVTSIADGIRSAIG-AVTG 373  Bacillus halodurans
15613523  351 VKVAWELIKLSVKNAIDYVSGIIDTVMNLIKGDWEGAWESIKKTAERIWNNMEAFFES-VNLIEIGKDLIRGLWE-GIGS 428  Bacillus halodurans
15927531  909 LIEGLNWVGGKLGMDKIPKLHTGTEHTHTTTRLVKNGKIARDTFATVGDKGRGNGPNGFRNEMIEFPNGKRVLTPnTDTT 988  Staphylococcus au...
15675357  551 LKNIFSLAWMAMGDAINVAKGIISSVINGIKSAFSSFSSLVSSVGSAVNGVIDSISSTIRGLANIDISGAGAAIMnGFLN 630  Streptococcus pyo...
16799245  383 ITNIFSSIVTVIGAAFQMVFAVASKIWNAIMATISGIIDGIKSVITGISTTVSSVFNGVKRIITGVFDGIKGAWG-GLTE 461  Listeria innocua
15616080  782 FVSGVFSGIGNAVQRLVNQVKSFVNGVISGINAAIGLINKIPGVNISKIPHLARGTDDWEGGFARINEGGRGELVLLPSG 861  Bacillus halodurans
15612575  374 AISNVASKIRNFLP-FSPAKEGPLQDIHR-----LNFGGPIRDSIDGDLPEIQSSLT--R--ALHVPEVGIGQVGSSPLL 443  Bacillus halodurans
15613523  429 MKDWILGKIGGFMDSIVNNLLSFFGINSPSRLFRDDIGQWLPKGLAVGIEGNLNTVDKAITVMTNLVPSTIDAPAMAPME 508  Bacillus halodurans
15927531  989 AYLPKGSKVYNGAQTYSMLNGTLPRFSIG--TMWKDIKSGASSAFNWTKDQIGKGTKWLGDKVGDVLDFIENPGKLLNYI 1066 Staphylococcus au...
15675357  631 GLKSAWGAVKSFVSGIANWIAEHKGPISYDRVLLKPAGKAIMGGLNTSLIDGFKEVKSNVSGMADDLASTMTGKSLSLGI 710  Streptococcus pyo...
16799245  462 FVGTIFDGVSNAIQTVVDNVKGFVNVVIRGINSAISLINKIPGVEIGKIPQLISGTTNFQGGFARMNEGGRGEMVVLPSG 541  Listeria innocua
15616080  862 TQVIPHDVSMRYAreiGKNHAQLSQGGSDLRDFTVYNGPKEVVVPVNLDGREIARVTAPYMDRELGHIQRSRIRSRGGF 940  Bacillus halodurans
15612575  444 MRLIKSLDALGLN---G-NHGMLAGAGSEK--------VV-IEVPVHLEGKEVARVTAPYMDTELGKRRISTVRARGGR 509  Bacillus halodurans
15613523  509 VARPNLSGGSIHGe-lAVSGGMTTSNTESLLGQIVDELRRQKDRIIEMDSRIVGRLVEPHVSESQGRKQYRTQRSPR-- 584  Bacillus halodurans
15927531 1067 LEAFGIDFNSLTK---GMGIAGDITKAAWSKIKKSATDWIKENLEAMGGGDLVGGILDPDKINYHYGRTAAYTAATGRP 1142 Staphylococcus aur...
15675357  711 DAKPSVTADDLLS---S-NISTKTTVGSATSDLSLFFVKVLALLQDILDKNTDVYLDKEKVSAILYEEFAKIMAREGIV 785  Streptococcus pyog...
16799245  542 SQVIPHDATMKYAresARGNKSMLYTNQGT-DLARVENLLERLLQKNPVIKMDDKVVSEVVSRNQANSFDQYNYTMGGA 619  Listeria innocua
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap