3O66,3PPN,3R6U,3PPP,3PPQ,3PPO


Conserved Protein Domain Family
PBP2_OpuCC_like

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cd13608: PBP2_OpuCC_like 
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Substrate-binding protein OpuCC of ABC-type osmoregulatory transporter and related proteins; the type 2 periplasmic-binding protein fold
This subfamily includes the periplasmic substrate-binding protein OpuCC of the ABC transporter OpuC (where Opu is osmoprotectant uptake), which can recognize a broad spectrum of compatible solutes, and its paralog OpuBC that can solely bind choline. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270326
Aligned: 33 rows
Threshold Bit Score: 388.905
Created: 22-Feb-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:3O66; Staphylococcus aureus glycine betaine/carnitine/choline ABC transporter binds triethylene glycol, contacts at 4A.
  • Structure:3R6U; Bacillus subtilis Abc transporter Opubc binds choline ion, contacts at 4A.
  • Structure:3PPP; Bacillus subtilis Abc transporter Opuc binds trimethyl glycine, contacts at 4A.
  • Structure:3PPO; Bacillus subtilis Abc transporter Opuc binds D-carnitine, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                                                  ##  #                
3O66_A     10 DVKITALsTSESQIISHXLRLLIEHdthgkiKPTLVNNLGsstiQHNALIngDANISGVRYNGTDLTgalkea-pikdpK 88  Staphylococcus aur...
3PPN_A     41 TIKIGAQsMTESEIVANMIAQLIEHdt--dlNTALVKNLGsnyvQHQAMLggDIDISATRYSGTDLTstlgke-aekdpK 117 Bacillus subtilis
3R6U_A     13 TIKIGAQsMSESEIIASMLGQLIEHht--dlKTTTIKNLGsnavQQQALMngEIDIAATRYTGDALTgtlrme-pekdpD 89  Bacillus subtilis ...
3PPP_A     41 TIKIGAQsMTESEIVANMIAQLIEHdt--dlNTALVKNLGsnyvQHQAMLggDIDISATRYSGTDLTstlgke-aekdpK 117 Bacillus subtilis
3PPQ_A     41 TIKIGAQsMTESEIVANMIAQLIEHdt--dlNTALVKNLGsnyvQHQAMLggDIDISATRYSGTDLTstlgke-aekdpK 117 Bacillus subtilis
3PPO_A     41 TIKIGAQsMTESEIVANMIAQLIEHdt--dlNTALVKNLGsnyvQHQAMLggDIDISATRYSGTDLTstlgke-aekdpK 117 Bacillus subtilis
EGO65378   34 PVRVGSLtFSESVILAEMIKLLLEEnl--gyQVDHVTNLStstiAHQAMIn-KEIDISSRYTGTEMTgplemdqpirdpE 110 Acetonema longum D...
EGK06864   34 TVKIGTLnTTESAIVSHIVRLMIEKet--hlKVEMIENLGsstvQHQALTngDVDITPTRYTGTDLTgalame-pekdpE 110 Desmospora sp. 8437
AEH52482   32 SVKIGMTnSTETQIIGYMEKDMIEHyt--diKVDMVNNLGssivLHKAMTsgQINISAVRYTGTDLSgalgme-pvtdpK 108 Bacillus coagulans...
AER67514   38 TIRVGGQtVNESVILAWMAKLLLDEyt--glDVKINTEFAassvLHQAMAq-GELDVYPSWTGTQLMgilryegpklssE 114 Thermovirga lienii...
Feature 1                              # #                                                    
3O66_A     89 KAXIATQQGFKKkFDQTFFDSYGFANTYAFXVTKETAKKyhletvsdlakhskdlRLGXDs-sWXNRkgdGYEGFKKEYG 167 Staphylococcus aur...
3PPN_A    118 KALNIVQNEFQKrFSYKWFDSYGFDNTYAFTVTKKFAEKehintvsdlkknasqyKLGVDn-aWLKRkgdGYKGFVSTYG 196 Bacillus subtilis
3R6U_A     90 KALALTQREFKKrYDLKWYDSYGFDNTYAFTVSKELADQyhletvsdvkkwapqlKLGVDn-yWMKLkgnGYQDFTKTYG 168 Bacillus subtilis ...
3PPP_A    118 KALNIVQNEFQKrFSYKWFDSYGFDNTYAFTVTKKFAEKehintvsd-lkknasqYKLGVdnaWLKRkgdGYKGFVSTYG 196 Bacillus subtilis
3PPQ_A    118 KALNIVQNEFQKrFSYKWFDSYGFDNTYAFTVTKKFAEKehintvsdlkknasqyKLGVDn-aWLKRkgdGYKGFVSTYG 196 Bacillus subtilis
3PPO_A    118 KALNIVQNEFQKrFSYKWFDSYGFDNTYAFTVTKKFAEKehintvsd-lkknasqYKLGVdnaWLKRkgdGYKGFVSTYG 196 Bacillus subtilis
EGO65378  111 KAFDHVQNEYQKrFQQTWLKPYGFENTYALTVRRDVAEKyglkkvsdlakvaanmRLGTDt-sFLERegdGYAAFCQLYG 189 Acetonema longum D...
EGK06864  111 KALKQVQKEFGKrFDQTWFDSYGFANSYAFTVTRKTAEKenlktvsdlrrvasklSLGVDs-sWLKRkgdGYVGFVKTYG 189 Desmospora sp. 8437
AEH52482  109 KALKIVKQQFEKrFHQTWFDSFGFANTYAFTVTKSLADKdhltkvsqlkpvakdlRLGVDn-sWLKRkgdGYDGFVKTYG 187 Bacillus coagulans...
AER67514  115 ETFKMVKEGFEKnFDMTWAKPIGFNNTYVMTVRSETAEKynlhkasdlkgvaekmKLGCDe-nFDTRp-dAYPGWSEAYG 192 Thermovirga lienii...
Feature 1                                 #                       #                           
3O66_A    168 fdFGTVRPXQIGLVYDALNTekldVALGYSTDGRIAAYDLKVLKDDkqFFPPYAASAVATNellrqhpELKTTInkltgk 247 Staphylococcus aur...
3PPN_A    197 feFGTTYPMQIGLVYDAVKNgkmdAVLAYSTDGRIKAYDLKILKDDkrFFPPYDCSPVIPEkvlkehpELEGVInkligq 276 Bacillus subtilis
3R6U_A    169 mtFGGTYPMQIGLVYDAVKSgkmdIVLAYSTDGRIKSYGLKMLKDDkqFFPPYDCSPVVPEkvlkehpELEGIIkkmlgk 248 Bacillus subtilis ...
3PPP_A    197 feFGTTYPMQIGLVYDAVKNgkmdAVLAYSTDGRIKAYDLKILKDDkrFFPPYDCSPVIPEkvlkehpELEGVInkligq 276 Bacillus subtilis
3PPQ_A    197 feFGTTYPMQIGLVYDAVKNgkmdAVLAYSTDGRIKAYDLKILKDDkrFFPPYDCSPVIPEkvlkehpELEGVInkligq 276 Bacillus subtilis
3PPO_A    197 feFGTTYPMQIGLVYDAVKNgkmdAVLAYSTDGRIKAYDLKILKDDkrFFPPYDCSPVIPEkvlkehpELEGVInkligq 276 Bacillus subtilis
EGO65378  190 fkFGQTFPMEIGLVYQAVKSqqvdVVIAYSTDSRVKSFDLVVLEDDkrFFPPYEAAILIRNetleqykGLKEELeklsgk 269 Acetonema longum D...
EGK06864  190 fkFSRTFPMQIGLVYQAVGSgkmdVVLAYTTDGRLKAFDLVALEDDkqFFPPYDASPVARNdvlkkhpKIRDILerlagk 269 Desmospora sp. 8437
AEH52482  188 ftFGNTYPMELGLVYKAVKSgkadVVLAYSTDGRINAYNLVMLEDDkhFFPPYDASPVVRDdtlkqhpELRKVLqklvgk 267 Bacillus coagulans...
AER67514  193 itFKEVVPMQYAMMYKAIANkevdAIAAYSTDSRIAKLNLVMLEDDkgFFPDYSAAYVIDMktlkkypAILPILeklsgk 272 Thermovirga lienii...
Feature 1                                  
3O66_A    248 istSEXQRLNYeadgkgkePAVVAEEFLK 276 Staphylococcus aureus subsp. aureus Mu50
3PPN_A    277 idtETMQELNYevdgklkePSVVAKEFLE 305 Bacillus subtilis
3R6U_A    249 idtATMQELNYevdgnlkePSVVAKEYLE 277 Bacillus subtilis subsp. subtilis str. JH642
3PPP_A    277 idtETMQELNYevdgklkePSVVAKEFLE 305 Bacillus subtilis
3PPQ_A    277 idtETMQELNYevdgklkePSVVAKEFLE 305 Bacillus subtilis
3PPO_A    277 idtETMQELNYevdgklkePSVVAKEFLE 305 Bacillus subtilis
EGO65378  270 istTTMTELNYkvdeqkldPVKVAREFLQ 298 Acetonema longum DSM 6540
EGK06864  270 idtDTMLELNYeadvnmkePATVAKEFLE 298 Desmospora sp. 8437
AEH52482  268 idtKTMQQLNYesdvemkePSTVAKEFLE 296 Bacillus coagulans 2-6
AER67514  273 ideKTMSSLNGrydn-geePEDIAEEFLE 300 Thermovirga lienii DSM 17291

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