1OCR


Conserved Protein Domain Family
Cyt_c_Oxidase_Vb

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cd00924: Cyt_c_Oxidase_Vb 
Click on image for an interactive view with Cn3D
Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Statistics
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PSSM-Id: 238464
Aligned: 23 rows
Threshold Bit Score: 107.385
Created: 11-Apr-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:Zinc binding site [ion binding site]
Evidence:
  • Comment:Tetrahedral zinc binding site in zinc finger motif
  • Citation:PMID 8638158
  • Structure:1OCR; Cyctchrome subuint Vb with bound Zn ion

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                               # #   
1OCR_F      1 ASGGGVPTDEEQAT------------GLEREVMLAARKGQDp--YNILAPKATS-GTKEDPNLVPSITNKRIVGCICEEd 65  cow
NP_492601  34 EDYGYYPDPLEHAT------------GREKKMLLARLAGDDr--YEPKVYYRAEaSTKQKPNLVPSHYDFRIIGCMCEQd 99  Caenorhabditis ele...
P29505      6 KFLKELATPSHSMEffhkp---asnsLLDASELNFVRRNIKredFGHEVLTGAF-GTLKSPVIVESIFHSRIVACEGGDg 81  Dictyostelium disc...
AAO42639   58 RFCKMMNDPLEHAT------------GIEKRELLLKAAGNDn-pFDMKVFKRGA-GTKENPNLIPSAFDARIVGCICEEd 123 fruit fly
NP_704816 113 KSYKQLAIDMGMQIa-----------NSDNEHMLALLEYYEy--LKSSPFVGPF-GTIENPVLVPSVHVERVVCCTGGTg 178 Plasmodium falcipa...
NP_609047  45 AAPQQRPISTTQVQksaliaddqlvtGIQKREMLLAKQGCEdpwGFSKVIRRGS-GRENDPTVVPSAFDARLVGCLCLDd 123 fruit fly
AAY66932   26 SEEKRIYDAMEYAT------------GIEKKELLARAAGNDd-pFDMRVFKRGP-GTKDNPNLIPSHLEKRMIGCICEEd 91  black-legged tick
XP_624987  25 SKKETFPDPLELAT------------GLEKRELLAAAAGNFd-pYHMKAIEISRdSTKDCPNLVPSAFKSRIVGCICEPd 91  honey bee
XP_786378  27 AAGGGIPDNFEHAT------------GLEKKELDRIKAGDSd-pFQLNVRRVAA-GTKTKPVEVTSAFQKRIVGCICEEe 92  purple urchin
EAL34364   55 VLKAEMADDMELAT------------GIAKREMQLKEQGCGd-pWGLGKILKRGsGRLNDPTEIPSAFDGRLVGCLCLDd 121 Drosophila pseudoo...
Feature 1                        #  #            
1OCR_F     66 --nSTVIWFWLHKG-EAQRCpsCGTHYKLVPHQLA 97  cow
NP_492601 100 --sGHVNFMTIRKG-DPKRCe-CGHWFKGVDADPE 130 Caenorhabditis elegans
P29505     82 e-eHDILFHTVAEK-KPTICldCGQVFKLKHISSE 114 Dictyostelium discoideum
AAO42639  124 --qTYVQWMWLQKG-NQKRCe-CGHWFKLVEKAAV 154 fruit fly
NP_704816 179 eneHVPLFFRCREG-FLYRCgeCDQIFMHVRVLYS 212 Plasmodium falciparum 3D7
NP_609047 124 ---RLPKWMWIEKDeGPKRCe-CGHYFILKNVPPV 154 fruit fly
AAY66932   92 --aTTINWMWLHRG-DPKRCe-CGHWFKIVDAKPL 122 black-legged tick
XP_624987  92 --tSHVNWMWLHDG-QPRRCe-CGHWFKLTQVAPL 122 honey bee
XP_786378  93 --qTHINWMWLYTG-EPQRCe-CGHWFKLQEVEGI 123 purple urchin
EAL34364  122 ---RFAKWMWLEEG-PPKRCe-CGHYFVLKKVPPV 151 Drosophila pseudoobscura

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