1EU8,3JZJ,3UOR,4G68,4AQ4


Conserved Protein Domain Family
PBP2_TMBP_like

?
cd13585: PBP2_TMBP_like 
Click on image for an interactive view with Cn3D
The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold.
This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
?
PSSM-Id: 270303
Aligned: 263 rows
Threshold Bit Score: 180.679
Created: 25-Mar-2009
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1EU8; trehalose/maltose-binding protein from the hyperthermophilic archaeon Thermococcus litoralis in complex with trehalose, contacts at 4A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1EU8_A         5 KIVFAVggap-neieYWKGVIAEFEkkypgvTVELKRqatdte--qrrldLVNALRGKssDPDVFLm-dVAWLGQFIASG 80  Thermococcus li...
AAK46380      37 ALTFFFaanp-delrPRMRVVNEFQrrypdiKVRALLsgpgv----mqqlATFCAGGK--CPDVLMa-wELTYAELADRG 108 Mycobacterium t...
ADK79873      31 ELEFWMrdtrpsnveAMDLIVESFEqq--hpGIKVNVvltpwd-sveqktMTAIAAGT--LPDLSQl-nQTGAADYGEKG 104 Spirochaeta sma...
ABK05270      44 PIKIWYsnne-fevkWGKAMVESWNaa--hpDEKIDAqeipagksseeviGAAITAGN--APCLVFntaPVAVPQFQKQG 118 Arthrobacter sp...
EFL27836      90 AISVWAhqgqksesaALRKAVKSFNss--qhKIKVELkliptn--dytktITATDASK--LPDVMEf-dGPTMANFVYNK 162 Streptomyces hy...
YP_002882610  62 LQVYWNagh---ayaAYEDLIAAFEde---hDVTVNLqvfqwd-dmrtrlMADLQAGT--VPDLVEe-pGGWVQEFALTG 131 Beutenbergia ca...
ACY47262      38 RLVYWTapnp-delaLARELVAEWTaa--npDVEVIVqpipagqsseevlLAAVAAGT--TPDLCSniwPGIVEDFVEAG 112 Rhodothermus ma...
ACB77422      32 ELRVWChqgqeqenlAMRAIAAEFNrahadrGIHATLtffpdy-hytekiAIAAAAHD--LPDVLDl-dGPLVARYVDAG 107 Opitutus terrae...
EGE60556      27 VIQVMHqgdp-gfvaAYGKVAERFEaa--npDVDVQFiyaphd-aynekfSAAVMAKQ--LPDVMEl-dAPFLANYVWSG 99  Rhizobium etli ...
YP_002509300  26 EITVWYhsgrggereVIEDQVKRFNam--qdEVKIKLvqlpeg-syneqvQAAAMSGD--LPDVLDl-dGPFIANYAWSG 99  Halothermothrix...
Feature 1                                                  # #                                   
1EU8_A        81 WLEPlddyvqkdnydls---vffqsvinladkqGGKLYALPVYIDAGLLYYRKDLLekyg------yskPPETWqelvem 151 Thermococcus li...
AAK46380     109 VLLDlntllardqafaaelksdsigalyetftfNGGQYAFPEQWSGNFLFYNKQLFddag------vppPPGSWerpwsf 182 Mycobacterium t...
ADK79873     105 ILLNlddelkswdrln-----dicgvsvsqakyNGEFYAIPWFAGSNVMFYNKDLFieagivdadgnaaPPKNWeeflad 179 Spirochaeta sma...
ABK05270     119 GLVAldsfpdgaqyikd----rtgdladqykstDGKMYQLPWKSNPVVLFYNKDIFaka--------glDPENPklgsha 186 Arthrobacter sp...
EFL27836     163 KLAPmdsyvsaktmsn------atdagkaqgeiDGKHYGLGMYDAGLGVYGNKKLLdaagvk-yptnlsDDWTAteftaa 235 Streptomyces hy...
YP_002882610 132 DALPltdylasdgeamgf-pgdwhpftvernslDGVVYGIQLHLTCVLPFYNVSMFddag------itaPPTTWeeflac 204 Beutenbergia ca...
ACY47262     113 ALVPldrfpdfdsllea---ripetvrepfrsrDGHFYQLPWKTNPVMMFYNVQLLreag------ferPPRTYgeylea 183 Rhodothermus ma...
ACB77422     108 LLAPidhwfsvdelad------flptlvaqgtiEGRLYALGAFESAVVLYYDRDTFaragve--apppgVAWSWseflaa 179 Opitutus terrae...
EGE60556     100 YLQPikplidkdvledm----tesniaqgtypiDKDLYAIGLTDSSVVLYGNKKYLeaigar-ipksvdDAWTReefety 174 Rhizobium etli ...
YP_002509300 100 YLRPledyvspelked------llpsilaqgtyQGHLYALGTFDSGLAIWGNKEYLedvga---riptsVEDAWtftefm 170 Halothermothrix...
Feature 1                                                                                        
1EU8_A       152 aqkiq--------sgeretnpnfwGFVWQgkqy-----eglvCDFVEYVYSNG--GSLGEfkd-gkWVPTLNKPENVEAL 215 Thermococcus li...
AAK46380     183 aefldaaq--altkqgrsgrdrqwGFVNAwv----------sFYAAGLFAMNN--GVPWSvprmnpTHLNFDHDGFLEAV 248 Mycobacterium t...
ADK79873     180 akkltk-------dtdgdgvvdqwGFVTRgdv-------sltIPIREFMLAAG--DGEWVds---nRNVIVDSKKNLEGL 240 Spirochaeta sma...
ABK05270     187 efleta-------rtlvksgatanAVWPSpasdf----fqswFDFYPFYAANTdgTPLLKd-----SKATFDSEEGKQVA 250 Arthrobacter sp...
EFL27836     236 lka------------lgtkdsdgkVVDLQensgya--newgtFGFAPVLWSAG--GSLLKdg---kAEGALDTPAALSAM 296 Streptomyces hy...
YP_002882610 205 aq--------------elttgdvyGFAANqd----------pSYANPWFTQND--VLLWDda---aALALSPTDAAVEAL 255 Beutenbergia ca...
ACY47262     184 arrvtadtdgdglidrwmgyrdirPIWWQry----------fDYYAFYIAASG--GRTLFdr---eGRLAVDTAASNRVF 248 Rhodothermus ma...
ACB77422     180 c-----------------qrlrdaGFEPValhldesadewftYAFSPLVWSAG--GKLIQqq---rVRGVLDSPAAVRAL 237 Opitutus terrae...
EGE60556     175 leklsk------ldgvkwpidtfrGYGIKtew--------itYAYGPILQSAG--CDLIDrka-wkSEGTLDSDACVDAL 237 Rhizobium etli ...
YP_002509300 171 dil------------kklkehpdvKYPLDfkinyg-kgewfsYGFSPIFQAFG--ADLINrdnfttAEGVLNGPEAMAAA 235 Halothermothrix...
Feature 1                                                  # #                                   
1EU8_A       216 QFMVDLihkykISPPNtytemteePVRLMFQQgn--aaFERNWPYawglhnaddspvkgkVGVAPLPhfpg--hksaATL 291 Thermococcus li...
AAK46380     249 QFYADLtnkhkVAPSAaeq--qsmSTADLFSVgk--agIALAGHWryqtfd---radgldFDVAPLPigprg-raacSDI 320 Mycobacterium t...
ADK79873     241 NFYLDLfqrykVVPPDtpsv-dyvGEEQYFLSgk--vaMMFNGPWnlgnmy----dssvnWGVALEPkre----knaCHI 309 Spirochaeta sma...
ABK05270     251 TMFATLyk-enLASKEv-------FQGDAFGEgk--saMSLAGPWaiaay-----kdkvnWGAVPVPaaesk-agtsTFS 314 Arthrobacter sp...
EFL27836     297 KTLQSWk---pYTDPN--------TDGNAFANgr--vaLSWVGHWmypays---kalgddLVVLPLPdfgn---gpkTGQ 357 Streptomyces hy...
YP_002882610 256 RFQGDLihrhqVAPIPsntg-dysGPQKLFSAgr--aaMILTGPWdlepir----tgspdLEYAIIPaltg--avqaTNS 326 Beutenbergia ca...
ACY47262     249 DFFARLya-mgAFPKAvw-----tSAGSRFLKgq--laTDFTGPWhliwlek-happtltYDVAPIPvpddhegpvyTYG 319 Rhodothermus ma...
ACB77422     238 QAWQQVfr-rgFAATDp-------VNPDPFGSge--vaMDWSGHWmarrhv---eakadrLGVMPLPrmgd---hpvAPC 301 Opitutus terrae...
EGE60556     238 AMMQKWvkngwVVPQS--------AGTNQFFAegnpaaLALGGHWvyaeaa---atmkdnIVVLPLPkfga---kgaSPD 303 Rhizobium etli ...
YP_002509300 236 WFQALFeq-gyANPNP--------PGDTEFTNgd--aaLSWCGHWgynqyk---dalgddVVLIPMPkfa----tqvTGM 297 Halothermothrix...
Feature 1        ###                                               #                             
1EU8_A       292 GGWHIGISKysDNKALAWEFVKfvesysvq------------kgfamnlgWNPGRVdvyddpavvsksphlkelravfen 359 Thermococcus li...
AAK46380     321 GVTGLAIAAtsRRKDQAWEFVKfatgpvgqalig-----esrlfvpvlrsAINSHGfanahrrvgnlavlsegpaysegl 395 Mycobacterium t...
ADK79873     310 GGCPVGIFNttEHPNEALLFAKylvsdeaqkiwa----vdmgnglpvtqkAQELAKqdpvikvfveslqaadadnvtppp 385 Spirochaeta sma...
ABK05270     315 DAKNVAMYSacENQGTAWEVMKfatsqeqdg-----------kllaetgqMPMRKDlttayadyftknplytqfaeqagr 383 Arthrobacter sp...
EFL27836     358 GSWAWGIGAnsKNAKAAGTFLDtllndtnvtamttangappatrsalaksELYQRGgplqlfadqlakpcrdsdvtktcv 437 Streptomyces hy...
YP_002882610 327 GGTSMFIPTnaANPDLAWQLMValtaldtelaa------teesamcmpriSWGEDAavqgnelvapfatampyavdfsad 400 Beutenbergia ca...
ACY47262     320 DYKNIVIFSttRHPDVAWRLARflvsreadrrll-----ertrqipvrrgLLDDPYfapvferypilrrfaeqaaytrsv 394 Rhodothermus ma...
ACB77422     302 GSWCWGISAsaRDPAAAALWLRwitdarhgi-----------eplvrangAVPARRsafaffpeyaqppyslfrtqleqf 370 Opitutus terrae...
EGE60556     304 GTWIWAVTKtsAHPDISGKFVSfllkdkefr----------tyvasqsgyPGLKSFaaesplyapggpmaiafeqaskta 373 Rhizobium etli ...
YP_002509300 298 GSWAWSITQncENPEAAWKFIEfilqpeeiv-----------kmtnangaVPSRLSaaklsepykpggelrifveqlqki 366 Halothermothrix...
Feature 1                                                     
1EU8_A       360 avprpivpyyPQLSEIIQKYVNsala---gkisPQEALDKAQKEA 401 Thermococcus litoralis
AAK46380     396 pvtpawekiaALMDRYFGPVLRgsrpa-tsltgLSQAVDEVLRNP 439 Mycobacterium tuberculosis H37Rv
ADK79873     386 qipewvsierSVAPPIFQSALLge-------itAEACLAQLQSAM 423 Spirochaeta smaragdinae DSM 11293
ABK05270     384 tvevpnvpnsVEVWQTFRTAYAksvif--gnesIDSAFKGAAEKI 426 Arthrobacter sp. FB24
EFL27836     438 avtrpvtagyPTVTAKFSDALNaiyg----gadPKGALEKAARAI 478 Streptomyces hygroscopicus ATCC 53653
YP_002882610 401 srltgknadfTENFATMYQSVAfqd------adAAAAVATFQDAM 439 Beutenbergia cavernae DSM 12333
ACY47262     395 dsapdlkeilDAFAQEFEAAAVfgv------rsPAEATRRALRRI 433 Rhodothermus marinus DSM 4252
ACB77422     371 arprprtphyATLTQRFAAALRdi-------ahGADVEPRLRAAA 408 Opitutus terrae PB90-1
EGE60556     374 varpphpaypTITSAFMQAVDEafn-----ggdPKEALASAAKKI 413 Rhizobium etli CNPAF512
YP_002509300 367 averpvtpayPTITDAFATAIDniinggdiryeLNEAVRAIDEEI 411 Halothermothrix orenii H 168

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap