Conserved Protein Domain Family
soxB

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TIGR01373: soxB 
sarcosine oxidase, beta subunit family, heterotetrameric form
This model describes the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. [Energy metabolism, Amino acids and amines]
Statistics
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PSSM-Id: 273585
Aligned: 5 rows
Threshold Bit Score: 747.026
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O87388         2 RYSALSILLNGLRGNRNWAPAWRQPDPKPHYDVIIVGGGGHGLATAYYLAKEFGITNVAVLEKNYIGSGNVGRNTTIIRS 81  Sinorhizobium m...
WP_010910039   3 EYSAFSLLANALKGNRDWKPAWRKPDPKASYDVIIIGGGGHGLATAYYLAKEHGITNVAVLEKGWLGSGNVGRNTTAVRS 82  Mesorhizobium loti
WP_010911425   3 KYSVFAIAREAMRGHKGWEEQWSSPEPKKEYDVIIVGAGGHGLATAYYLATVHGITNVAVLEKGWLGGGNTGRNTTIIRS 82  Mesorhizobium loti
WP_003148382   3 RYSGFGLLKHSLSHHENWQRMWRTPTPKPVYDVVIVGGGGHGLATAYYLAKEHGISNVAVVEKGWLGGGNTARNTTIVRS 82  Pseudomonas aer...
WP_010913055   4 RYSALSLIKEGLAGQTGWKQAWRSPEPKPTYDAIIIGGGGHGLATAYYLANNHGITRVAVLEKGWIGGGNTGRNTTVVRS 83  Mesorhizobium loti
O87388        82 NYLLPGNNPFYELSMKLWEGLEQDFNFNAMVSQRGVLNLFHSDAQRDAYTRRGNAMRLHGVDAELLYRAAVRKMLPFLDF 161 Sinorhizobium m...
WP_010910039  83 NYLLPANTRFYEHSMKMWEGLSHELNYNVMFSQRGCLNLAHTPAQFDDYARRGNAMRHLGVDAELMTPAQIKRLIPAIDI 162 Mesorhizobium loti
WP_010911425  83 NYLYDESAGIYDHALKLWDGLSQELNYNVMYSARGVMMLAHNVHDIQVLKRHVHANRLNGIDNEWLSPEQAKEFCPPLNV 162 Mesorhizobium loti
WP_003148382  83 NYLWDESALLYEHAMKLWEGLSQDLNYNVMFSQRGVYNLCHTLQDMRDGERRVSANRLNGVDGELLNAQQVAEEIPYLDC 162 Pseudomonas aer...
WP_010913055  84 NYYYPESVELYGLAHRLYEGLSKDLNYNVMLSQRGMVNLCHSTAEMEIGARTVNAMQINGIDAELFSPEDVRRVAPIYNF 163 Mesorhizobium loti
O87388       162 D-NARFPIQGGLLQRRGGTVRHDAVAWGYARGADSRGVDIIQNCEVTGi-RRENGRVIGVETSRGFIGCAKLALAAAGNS 239 Sinorhizobium m...
WP_010910039 163 SgDARFPVVGGLMQRRAGTARHDAVAWGYARGADRRGVDIIENCEVTGf-LRDGDRITGVTTSRGDIRAKKVAVAVAGST 241 Mesorhizobium loti
WP_010911425 163 SrDARYPVVGAALQRRGGTARHDAVAWGYARGASARGVHIIQNCEVTGvkRAANGAVMGVDTTRGFIGAKKVGVVAAGHS 242 Mesorhizobium loti
WP_003148382 163 SkSTRYPIMGATIQRRGGVARHDAVAWGFARAADALGVDLIQQTEVTGfrKQD-GAVIGVETNRGFIGARRVGVVTAGNS 241 Pseudomonas aer...
WP_010913055 164 SpDARFPVFGGIWQGRAGTARHDAVAWGYARAASRLGVDIIQNCEITDfiVE-GGRCRGVQTTRGAIRAERIGMAVAGHS 242 Mesorhizobium loti
O87388       240 SQVAEMAGLR-LPIESHVLQAFVSEGLKPFIDGVVTFGAGHFYVSQSDKGGLVFGGDIDGYNSYAQRGNLATVEHVAEAG 318 Sinorhizobium m...
WP_010910039 242 GRVMQLAGIEtMPIESHVLQAFVTESLKPFIDTVVTFGMGHFYMSQSDKGGLVYGGDIDGYNSYAQRGNLPIVDEVMSEM 321 Mesorhizobium loti
WP_010911425 243 SVIMNMAGVR-MPLESYPLQALVSEPVKPVVPCVVMSNTVHAYISQSDKGELVIGAGTDQYVSYSQTGGLHILQHTLDAI 321 Mesorhizobium loti
WP_003148382 242 GHMARLAGFR-LPLESHPLQALVSEPLKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDGYNGYGQRGSYPVIEHTLQAI 320 Pseudomonas aer...
WP_010913055 243 SVLAAKAGFR-LPINSYALQACVSEPVKPILDTVVLSPGCGVYVSQSDKGEIVIGGGLDRVPSYAQRGNLPTLETVIAGL 321 Mesorhizobium loti
O87388       319 KAMIPALSRVRVLRSWGGIMDMSMDGSPIIDRTPIDNLYLNAGWCYGGFKATPASGFCFAHLLARGAPQKTAAAFRLDRF 398 Sinorhizobium m...
WP_010910039 322 LALFPGLARVRMLRSWGGVCDMSMDGSPIITTGPLPGMYLNCGWCYGGFKATPASGWTFAWTIAKDEPHDFNAPFTLDRF 401 Mesorhizobium loti
WP_010911425 322 CEMFPIFTRMKMLRSWGGIVDVTPDRSPILAKTPVPGLYVNCGWGTGGFKATPGSGHVFAHTIARDDPHPINAPFTIERF 401 Mesorhizobium loti
WP_003148382 321 VEMFPVLSRVRMNRQWGGIVDTTPDACPIIGKTPVQNLFFNCGWGTGGFKATPGSGNVFAATLAKGEPHPLAAPFSIERF 400 Pseudomonas aer...
WP_010913055 322 LEMFPIFGQLKLMRQWAGIVDVVPDSSPIIGPSPLPNLFLNCGWGTGGFKAIPAGGTLLANLLATGKHNDISRPFDLDRF 401 Mesorhizobium loti
O87388       399 ERGFLIDE 406 Sinorhizobium meliloti 1021
WP_010910039 402 HRGLVIDD 409 Mesorhizobium loti
WP_010911425 402 RTGRLIDE 409 Mesorhizobium loti
WP_003148382 401 HSGALIDE 408 Pseudomonas aeruginosa
WP_010913055 402 ASGRLIDE 409 Mesorhizobium loti
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