Conserved Protein Domain Family
KU_like

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cd00789: KU_like 
Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.
Statistics
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PSSM-Id: 238408
Aligned: 55 rows
Threshold Bit Score: 301.765
Created: 7-Mar-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative DNAputative
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on similarity to the Ku heterodimer.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #                  #          #              #                                 
10174827      4 HTMWKGTISFGLVNIPIKLHA-ATENKDV-RLRQLHKECKTPINYLKVCPNCdaEVEPNDIVKAYEYAkNKFVELDEEEL 81  Bacillus halodur...
NP_769760     4 RANWKGFLRLSLVTCPVALYPaTSDTEKV-SFNQINRKTGHRIKYLKVDAETgdEVTSEDIVKGYKVDtDTYIEVTKDEL 82  Bradyrhizobium j...
BAB49295      4 RASWKGYLKLSLVSCPVRLYPaTTTSERI-SFNQLHKKTHNRINMKPVDPELg-LVERSDLVKGYEYEdKQYIIIDDADL 81  Mesorhizobium lo...
NP_773414     4 RAYWKGTLKLSLVSCPVVLYPaTTAAEKT-RFHMINRETGNRLKQQMVDSETgdVVESDQKGRGYELRkGKYVEIEPEEL 82  Bradyrhizobium j...
ABA79695      4 RSYWKGYLKLSLVTCPVTLMPaTSEAERV-RFRTLNGRTGHPVVSRYLDAETgdVVDDDDQVKGYPRSeTEHVILEEEEL 82  Rhodobacter spha...
BAB54815      4 RSYWKGYLKLSLVTCPVQMMPaTSESEKV-RFHTLNRETNNRVVSHYVDAVTgkEVKEEDEVKGYQRGeSDYIILEDEEL 82  Mesorhizobium lo...
YP_468159     4 QTFWKGYLKLSLVTASVSLTPaTTDSNKV-RFHVLNRQTKNRVESRYVDSVThkPVADTDQVKGYPRGeDDYVLLEDEEI 82  Rhizobium etli C...
YP_468161     4 RASWKGHLKVGDLACAVGLYTaISSSDRV-SFNIVNRRTGHRVERQFVDSETgkPVGRDDQVKGYRMEnGDYIVIEGDEI 82  Rhizobium etli C...
BAB51223      4 RPAWKGYLKLSLVTCAVELTNvVTHTERV-SFRILNRKTGNTVKRIYVDAETgkPLDDGDEIKGYELDdGDFVRIEEDEI 82  Mesorhizobium lo...
ZP_01418104   4 RPTWQGHLRLSLVTCPVAMYT-AVSPGGEvRFNLLHPKTHNRIKMIATDPDLg-PVDRADLVKGYEYEkDHYVILTPEEI 81  Caulobacter sp. K31
Feature 1                                                                        #              
10174827     82 ASLKkEQEDKAVEIIDFVKLQEIDPIYFDKSYYMSPGd-GGGKAYTLLREALAESEKIGVAKIIIRaKEHLAVIRVYKNT 160 Bacillus halodur...
NP_769760    83 DEIA-LDSTHTIEIDEFVPKADIDNRYLIRPYYLVPDgkVGHDAFAVIRETIRSMDKVAIGRVVLTnREHIIALEPLESG 161 Bradyrhizobium j...
BAB49295     82 DTVR-IESNHTMNIEAFVDEGEVDVIYQDAPYYLAPDgaMAEETFAVLREAMRKSGKLAIARLVLSsRERVVTIGARENG 160 Mesorhizobium lo...
NP_773414    83 EAVQ-IESNHTIDIESFVPSDEIDQRYLDHPYYIAPDgkAAIDAFAVIRDAMKDQERVALAKIVLTnREHVMAIEPLGKG 161 Bradyrhizobium j...
ABA79695     83 DAVA-LESARTIDIDCFVPSDEIAWIWYDRPHYLMPAdpIGEEAFAVIREAMRATDRSGVARLVLGgRERAVLLMPRGEG 161 Rhodobacter spha...
BAB54815     83 EDVA-LDSTRTIDIDVFSPRDSIEWIWLDTPYYLSPNdpVGQEAFSVIRDAMAAEDMVGISRLVISrRERAVMLEPRGKG 161 Mesorhizobium lo...
YP_468159    83 EEVG-LESTRTIDIDSFVPRGSIDWIWYDKPHFLAPGdkVGVEAFCVIREAMKANDVVGIARLVLYrRERAVLLEPQGKG 161 Rhizobium etli C...
YP_468161    83 AEIM-PESDKVLNVKAFIAYDGIDKLYFDRPYYLAPVdeHDEEALSLIVRGMRDSKVAALAEAVLFqRNRTLLIRPHDGH 161 Rhizobium etli C...
BAB51223     83 EAVQ-IESSHTMSLDGFVDKASIQQIYLDTPYYVAPAdkVSEEAFAVIRDAMAGKKMAGLARIVLYqRERPVVIEPLGKG 161 Mesorhizobium lo...
ZP_01418104  82 ESVR-LESTRTIDIERFVDADAIDRLYWDNPYFLVPDgkLAVDAYTVIRDAMAGAGKIALGRVVMHtRERLLAIEPRDNG 160 Caulobacter sp. K31
Feature 1                                                                                       
10174827    161 LLMETIHFPDEVRA-VDQVPNvpekVDVTKKEVDTALLLIDQLTTtFDPDKYEDDYRQALMEMIENKKAg-KQTVTAKEK 238 Bacillus halodur...
NP_769760   162 LMGTLLRYPYEVRS-EKEYFDdiqdVKLTKDMLDLAKHIVEKKSGaFEPELFEDHYEAALIDLINKKRS--GAPIAAKAA 238 Bradyrhizobium j...
BAB49295    161 MFVCTLRNPNEVRG-TAEYFGnipaGKPDPEMLELAEALIKQKETtFDPKDYEDRYEIALMAMIREKLKg-HKPIIAAAP 238 Mesorhizobium lo...
NP_773414   162 LLGTTLRYPYELRD-EDQFFDdiksPKITRDMVELAGHILHTKAAhFDPSKFKDQYETALKALVKRKAS--GKTIELPEP 238 Bradyrhizobium j...
ABA79695    162 IILWTLRYGDEVRP-EEAYFGdlaaGKPDPKALTLVKRLIEERTRtWEPGMVEDPVQENLLELIRSKKPk-KRSRKAGAK 239 Rhodobacter spha...
BAB54815    162 IVLWTLRYGDEVRD-EDAYFEgidaDKSDPEMMPLIQQFIKKQTRhWDSKLVSDPVQDKLLDIIEAKRKktKRPAKAKAS 240 Mesorhizobium lo...
YP_468159   162 IVLWTLRYGDEVRRpSAEIDDk---ARIDSKLLALMKRLVKEETKdWSPTMVQDPIQKQLKSMIRGKQKslKKAAPAKRP 238 Rhizobium etli C...
YP_468161   162 IVATMLNFDYEVRS-AEAVFRdipdIKFDKEMLELAGHIIETKHGsFDPSAYEDRYEAALVELVKAKIE--GRAPPKKKP 238 Rhizobium etli C...
BAB51223    162 MVLTTLRYDNTVRQ-PDSVFGeikaVKTDQEMTDLAELIIDKKKAkFDPSKFDDKYEDALLELIRAKKAg-HKAPKAKAA 239 Mesorhizobium lo...
ZP_01418104 161 LVAYTLRSHDEVRD-SSELFDeipdRKADPQMVAIAEKIIEQQEGpFDPSQFKDRYEDALRALIKQKEK--GGKFKVTVE 237 Caulobacter sp. K31
Feature 1                               
10174827    239 EPaa--sNVTDLMEALQASIDKTK 260 Bacillus halodurans C-125
NP_769760   239 PKtg--gNVINLMDALKKSLASEK 260 Bradyrhizobium japonicum USDA 110
BAB49295    239 ERg----NVINLMDALKASLSQSK 258 Mesorhizobium loti MAFF303099
NP_773414   239 EErp--sNVVSLMDALKQSLRGRG 260 Bradyrhizobium japonicum USDA 110
ABA79695    240 APkg-gdNVVSIMDALRKSIEGKG 262 Rhodobacter sphaeroides 2.4.1
BAB54815    241 GPtatpnNVINIMDALRKSVEAQN 264 Mesorhizobium loti MAFF303099
YP_468159   239 APlkssgNVINIMDALKKSLTAEG 262 Rhizobium etli CFN 42
YP_468161   239 APe---gKVVDLMEALRQSAKMSG 259 Rhizobium etli CFN 42
BAB51223    240 PKp---sNVVNLFDALKKSLSSDS 260 Mesorhizobium loti MAFF303099
ZP_01418104 238 EPet--tNVVDLMEALRKSLGQKP 259 Caulobacter sp. K31

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