Conserved Protein Domain Family
OMP_b-brl

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pfam13505: OMP_b-brl (this model, PSSM-Id:404399 is obsolete and has been replaced by 463903)
Outer membrane protein beta-barrel domain
This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.
Statistics
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PSSM-Id: 404399
Aligned: 65 rows
Threshold Bit Score: 50.1129
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015782163     10 VAFATITAVN--AQ-EFK--VGAKag---lLLSd-L-SIANT---SIQW---SDG--GTSYlttgdi--------nttlk 63  Capnocytopha...
Q5DZQ2            7 APLALALFVS--SP-AFS--AEEEpat-rnDVT--V-MVGRV---GFSS---HDD--ASAN------------------- 50  Aliivibrio f...
tigr:TERTU_0952   9 VLLVAASLLH--AGeALA--ESNEsylkenGVV--L-SLGQV---AFDSevaAQE--GVDD------------------- 57  Teredinibact...
WP_004723713      8 ilTTALLSLS--AT-AWC--DDTAyd---vKLG--A-AMWWG---STKV---DEVrhETDQ------------------- 51  Vibrio furni...
WP_009015058     12 aLAAFTSIAS--AA-PAT--SWEQgq---wQVD--L-GASDP---KAKF---DGL--ESDT------------------- 53  Acidaminococcus
CAR42892          9 ISFILPFSPS--LH-AFE--NNQ-------AIY--G-GYIYG---KIK----------NHK------------------- 41  Proteus mira...
vbi:Arad_1039    12 VAALALSAFV--FA-ANS--ASAEmq---fSAY--G-GIQGAtgsNVKTs--DGA--NFDPdwsgks---------fkmp 67  Agrobacteriu...
WP_012420720     32 ALAASVSSAS--AY-HAD--KYDgq----fGMSleG-AYGIA----TKD---AMP--NVA-------------------- 72  Akkermansia ...
jgi:Amuc_1664     7 ITSLGLMGLSctAQ-AAS--SDPWny---yRMG--G-NYSSA---YST-----RY--DSNFgmsirgmygfhsgndygid 67  Akkermansia ...
BAF70904          9 SGLLLGTTLF--AH-EQDsvHESEkp---yYVV--VkGIHNY---GDRN---GNE--KGDH------------------- 53  Nitratirupto...
WP_015782163     64 aG---FHF-GGFIEYGF--ND-----R---LFVEGGIDYa--fQGA--KVKSGetmtvnlstydvsnekenpnGTSIRTQ 125 Capnocytopha...
Q5DZQ2           51 -G---NGF-AIGVHKEI--NK-----I---VGISARYAR----HEL--LATGV--------------------TGEIGTF 89  Aliivibrio f...
tigr:TERTU_0952  58 -SalyVVA-GWEGRYRS--NL-----I---VGAGISLYD----YSD--NEAFEqltesnw------ggnernsSSSATAY 113 Teredinibact...
WP_004723713     52 -A---PAF-QAALDHQLryLPnfsvrY---TSVDANYAA----FDK--LDYTFyynllhhew---mnfdagvtVTQYRSS 114 Vibrio furni...
WP_009015058     54 -K---WNF-NGGLGYAL--SD-----K---WALRYDYHGlkteAGD--FKTAG--------------------DENEVNL 96  Acidaminococcus
CAR42892         42 -A---NGA-IISYHYGS--DI-----H---WGMLLSLLH----IKS--THQSHfidas-----------slklGTKDEHA 89  Proteus mira...
vbi:Arad_1039    68 pY---FGFrGIFWLDDF--NKs----N---WGISLDYTHak-vYGN--LGNTP--------------------GWSHFEF 112 Agrobacteriu...
WP_012420720     73 -G---GNL-SIFNYIET--GSiv--hQ---ISLNSGILA----GSHhpS---Vqdlgi-----------sgpyTASLRST 122 Akkermansia ...
jgi:Amuc_1664    68 mP---DLY-GAQLGLHA--NI-----PagsVFHELSFNLga-lTGS--KTYEG--------------------ELKWKQQ 113 Akkermansia ...
BAF70904         54 -G---NGI-GVDLGYRL--GH-----G---FAIEIDGSY----EKT--KVTVFeet--------------etlRENIKYW 98  Nitratirupto...
WP_015782163    126 Q-----LNIP------LWVKYDI--AG-F---R---PKVGVNLGfl-tK--AELK--GKNEdgns----------etlsL 170 Capnocytopha...
Q5DZQ2           90 G-----AYPE------FGYRFDL--NNaVs-vK---PYVMVGIE----NniLGYT--DYWQ------------------R 128 Aliivibrio f...
tigr:TERTU_0952 114 N-----LYGE------LGYGVDL--AP-Tv--S---LDLLAGYEmv-lSseRSIS--YCSDcy---------------sE 156 Teredinibact...
WP_004723713    115 H-----YRAQ------DDKTYDF--ND-Tt-fN---WYAAAELS----IpeTNFD--IIGQfd---------------vG 155 Vibrio furni...
WP_009015058     97 M-----YSLGrnaalfAGWAR-I--NN-Df--DgsvARGTYGID----SsdSVVN--NVAQfgaivkadlaknlalyaeG 159 Acidaminococcus
CAR42892         90 K-----VSALl-----IGPTYRI--TP-Sl--A---IYAQMGPK----KlkYRVDksYSGVav--------------tdT 133 Proteus mira...
vbi:Arad_1039   113 TdglnmLTLN------ALYRFQD--PG-Rk-wT---PYVGLGAGinvpHveVTRAs-GRTF------------------D 160 Agrobacteriu...
WP_012420720    123 Y-----IPMM------AGYTLNLpiGD-YtmfY---LGGKVGAT----YgdVKTT--IHGLedgs-----------rsrT 170 Akkermansia ...
jgi:Amuc_1664   114 V-----FPFT------AGYSFNVplSD-SatfY---LGGKIGLH----YykQELS--GGGG------------------K 154 Akkermansia ...
BAF70904         99 T-----TSLD------VAYTYEM--SE-Sl--G---ILFKVGYE----YeyEKTD------------------------S 131 Nitratirupto...
WP_015782163    171 NPNKTFDFGLGV--GAEYNLP---FGLFFDATFNLglTDVSTkekt--teqfPALE--MRN-RVIQIGVGYKF 233 Capnocytophaga ochr...
Q5DZQ2          129 HDFSVISFAKGL--GIRAEFN---DKVTLSIDIKR--ADIE-----------IADDyyVDS-TISSLMLGVKF 182 Aliivibrio fischeri...
tigr:TERTU_0952 157 DIDIDSGLFLAP--RLRFKPW---EHWMIALSYQG--YLT--------------GD--VE--SSAQISAGYIF 204 Teredinibacter turn...
WP_004723713    156 NNSGMKSSDVTA--GVQYRLPvkdGEWALKGGYRV--IDLEFddlatqspdtGTSY--VFV-DGWFLGADFRF 221 Vibrio furnissii
WP_009015058    160 ALGTKKTSMWEA--GLSYTIA---KDWDLNAGYRY--LDTKLd---------DDNN--IKY-RGFLVGLTYRF 213 Acidaminococcus
CAR42892        134 IIVDTTNVMFQA--GIDYSLR---KNVGINLGYLH--SDTES----------NKHN--IRL-NSIQLSLGYRF 186 Proteus mirabilis H...
vbi:Arad_1039   161 YQFGGASLQAQA--GVSYQIS---QHWATFVEYKGn-YNFVDnvsid-sgdtLKTK--VFT-NAINFGVSFNF 223 Agrobacterium radio...
WP_012420720    171 ISSTKFSWAAQA--GFKFSIS---NSADFLIGYEY--YQIQ-----------GYND--PGY-HTIKLGFSWNF 222 Akkermansia mucinip...
jgi:Amuc_1664   155 VSESDSSGTYSAliGFKFAVA---EKTDIVIGYEI--TKY-------------WSD--VDPyHFITVGFSWSF 207 Akkermansia mucinip...
BAF70904        132 ENGHDTGLVYAA--GFEYAFD---STWKILGEYEK--STI--------------EG--PKG-DMITLGVMYNF 180 Nitratiruptor sp. S...
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