Conserved Protein Domain Family
B3/B4

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COG3382: B3/B4 (this model, PSSM-Id:225917 is obsolete and has been replaced by 442609)
B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only]
Statistics
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PSSM-Id: 225917
Aligned: 13 rows
Threshold Bit Score: 225.307
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15599376   3 EHAPILPVIAAEVAALAPGFRALSLTVEAAPIVRPEIAGRAVERACQALARGEPD--WAEAHLAAWAEAFR-RFGAKPQR 79  Pseudomonas aerugin...
14601632   1 MGSIEISVEEPLLKLGVRLVYRVFDGVSVGESPGELVEILRSVEDETKRLFRGPEalKDDPRVKAYRRFLW-RLGIDPTK 79  Aeropyrum pernix
15613582   1 MTKLTIESSIFERVPSFKIGMITYHNIVVTPSPQMLRGRLQFFQEEVKVATNTTKtvTDYKGIVEWRQTFK-QLGIDPSK 79  Bacillus halodurans
16077955   1 -MNIKLDSVITERAAGLHAAAVIYENIEVGSSPQMLKGRLRLFQESLFFDYADGGi-SDESFVKEWQKLFK-QLNPSFEG 77  Bacillus subtilis
15004816   1 MKSFVIEDEFWSLFPNAKIGVVICHSIDNSIKDENQYKDMISNSEEEALSYLKNEefSSNEVIKVWREAFQ-KFKTKKG- 78  Clostridium acetobu...
15674160   1 MKKFIVEPEFWELFPETKIGIVLAKNIDNSMESSAEIKKNLDEANENAEQFLEAAvfSENPVVSVWRKAYQ-KFKTKKG- 78  Lactococcus lactis ...
20095119   1 ---MRVEVDPEVNDRGLRYAYVRVEGVDPGADASELVDRVTARLRERFD----LDdlKDDPIVRAYRDYLW-SIDVDPTK 72  Methanopyrus kandle...
18313857   1 -----MEIINEVRNLGVFVAYDVIVNIDNTKYVPKLVEEIEAAVEEARR-ALSLDtlKDHPIIRAYRDFYWrVLGIDPTK 74  Pyrobaculum aerophilum
17548905   4 NMYFYHSDAVWDRFPTLSALTMVLRGVRATSDAAVDIDATLDQVAAQLD--RTAEg--ELPSIQAWRQAYS-TMGLKPTQ 78  Ralstonia solanacearum
15675447   1 MVEFVADQSFWELFPGAKLGVVLLKDVQNQAESPEDVKQLLADSHELAKAYLTADnfSDNQVVQVYRKAYQ-HFKTKKG- 78  Streptococcus pyoge...
15897568   1 --MKRLSISEDVRRLGVFVAMTEVSNVDAKRPLDTLDDIIRNLEEKYAS--QDVEslRNDPVVRAYRDFYW-RIGIDPTK 75  Sulfolobus solfatar...
16765009   1 -MSSMLPSISPELARIAPGFRALSINVIAAPIRDAQVGEIALKEACQAVINGQPA--WAQAHIDAWNTVLK-AFGAKPKR 76  Salmonella typhimur...
13475336   1 --MFEGPIIDARIKSIASGFRAVSVYVDATSAEEGRFDPRLLGEACDCALADGPA--WAEAHLASWSDAYA-VFGAKPNR 75  Mesorhizobium loti
15599376  80 TPCSAEALRKRALRDGGLPSIDPVVDLYNAISVQFAIPVGGENLAAYAGP-PRLVVADGSETFDTLKngeALDESPDPGE 158 Pseudomonas aerugin...
14601632  80 VRPSSEALARRVLRGSSIPLINNVVDAGNIASLKTLVPIGLYDLDTVKPP-LKLALSRGGEVFEPIG---GKHQSLPQGY 155 Aeropyrum pernix
15613582  80 YRPSSEALYRRIKQGKSLPEIHSAVDVNNFFSLEYECPFGIYDAEKINGD-IVLKLGDIGAQYEGLN----GRVNAMEGK 154 Bacillus halodurans
16077955  78 ETTPMEDMLVPISKEQFMESKDSAHDTIDFFALKYSLPIMIYDAGKLHEP-VRISLGE-------------K-----ENI 138 Bacillus subtilis
15004816  79 ARSSIEALLKRVHKGNHIGTINPLVDIYNSISLRYAMPCGGEDIDAFAGD-IRLTKAVGNESFVTLg--tDKNEPPYEGE 155 Clostridium acetobu...
15674160  79 ARSSIENLLKRVDKGKAVGSINPLVDIYNSISLNYGLPAGGEDIDTFAGN-LRLTKAVGGEHFLALg--dDEADNALPGE 155 Lactococcus lactis ...
20095119  73 VRPAGEALLRRALRGN-FPRINAVVDSYNLASAEYRVPISCFDADKLTGD-LIIRPAESGEVMVDI----AGERMELDDR 146 Methanopyrus kandle...
18313857  75 QRPAQEALLRRVLRGEPLPRINPVVDAGNAASIKFIVPIGLYDIAKINSKtLRIRFSKKGEIFRPIG----GSPMELDNQ 150 Pyrobaculum aerophilum
17548905  79 YRCAAEALLRRFRKDRELPRFHPLIDTLNAESMHAAIPIAAFDCAHIVDG-ITVRPATGTERYRTFQ---GETEHPAEDE 154 Ralstonia solanacearum
15675447  79 ARSSIEALLKRVSNGQSIPSINPLVDIYNAASLRFGLPAGAEDSDSFIGD-LRLTITDGGDDFYLIg--dADNNPTLPNE 155 Streptococcus pyoge...
15897568  76 TRPSGEALRRRLARGNKLPRINIVVDIGNIVSAETLVPIGLYDRDKIVGD-LHLVMSKGNEEFLGLG---KKKEKLDKGI 151 Sulfolobus solfatar...
16765009  77 TPCSAEALRKRVLKDGTMAALDPVVDLYNAVSLRYAVPVGGENSAAYCGS-PRLVFADGSETFDTLKegqPATESPEPGE 155 Salmonella typhimur...
13475336  76 TPCSAQALRKRVLKDGTLSTINPIVDLYNAISLKYAVPVGGENFDAYVGR-PHLTVADGSETFDTMVngeAVNDPPLPGE 154 Mesorhizobium loti
15599376 159 VVWRDDL-GVTCRRWNWRQGVRTR-LDASARRMWFILESLPEMPLAALHEAGGLLLDELRLMMPGMRADSRLLCVA 232 Pseudomonas aeruginosa ...
14601632 156 PILVDSR-GLVMHIYPHRDSRVSM-ITSSTRRVLAVAAGVEGVGMDDLRRAIEMLSELLERFAGGEPLGPAVEVGG 229 Aeropyrum pernix
15613582 155 LVTCDAE-GPFG--SPIVDSKRTA-VTEKTTSAIQIAYLRPSLTDQDTEKLLTAAAHMFVQIHGGTSAHTVIRK-- 224 Bacillus halodurans
16077955 139 LLFSDEN-GIFG---DFKNSVNHYpVSNETKNMLQIIFFPPSIEKSSAVNLLSSLTKMFEQIHGGTHTVHWLT--- 207 Bacillus subtilis
15004816 156 IVYKDNE-GAICRCFNWRESVRTM-LTENTKNAFLCIELIDETRVKEFEDALDTLAKTVQDNLGGNCKISTLDINN 229 Clostridium acetobutylicum
15674160 156 ICYLDDE-GAVCRSWNWRDGQRTM-LTEQTKNAFLIIESVDPERGEVLDAATQKLAELSEKYLGGTAQVLLVTKEN 229 Lactococcus lactis subs...
20095119 147 FVVVADE-DGPVSVSPYRDARRTA-VTDETERVLLLAHGVPGVEVEHLVEALKTAVRYLREGAEAESASRIVTP-- 218 Methanopyrus kandleri AV19
18313857 151 IVLASD--GQILHIYPYRDSVDTK-VENSTREVLVVVAGVAGVEEERLLKTAYYLRDLLS-LLGGVPAGEVKLA-- 220 Pyrobaculum aerophilum
17548905 155 IVFADAAdEAHSRRWVFRQGATSI-VSKASDTVLIVAEALHDRAAEDLSALRESIRQRMNALGIAITDDAMLTRSH 229 Ralstonia solanacearum
15675447 156 LCYKDDI-GAFCRCLNWRDGERTM-VTEHTKNAFLIIEALDQEGQNRLQEALKFIEGSAKMYLHAITSVHVLDKDN 229 Streptococcus pyogenes ...
15897568 152 PILVDDE-GKVLHIYPHRDSVLTS-ITLNVKNVVIIGAGVPNIDENLVKYAVDRVADLLEKVCNGKREYNTMVIR- 224 Sulfolobus solfataricus
16765009 156 VIWRDDR-GVTCRRWNWRQGVRTR-LSASDKAMWFILESLPEMPVDELYAAGNMLTDGLEKMMPGLRFESTLIGV- 228 Salmonella typhimurium LT2
13475336 155 VIWRDDI-GVTCRRWNWRQGTRTR-LKTLTGRMWFVLEALETMPDDALAEATDAMVGGLNALMPGCKIASQEIAIA 228 Mesorhizobium loti
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