1YEL,4I1K,5Z00,6J9C,6J9B,6YCQ


Conserved Protein Domain Family
B3

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pfam02362: B3 
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B3 DNA binding domain
This is a family of plant transcription factors with various roles in development, the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
Statistics
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PSSM-Id: 396783
Aligned: 87 rows
Threshold Bit Score: 51.2194
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1YEL_A        11 FMKPF--ISEKSSKsLEIPLGFn----EYfPAP--FPITVDLLDYSGRSWTVRM-------KKRGEKVFLTVGWENFVKD 75  thale cress
P0CAP4       341 YVTLTltPEDVRACtLILPSQFm---kAN-GINklG--KKTLLGQNRKKWFAYL-------LSKSGFVALGSGWKGFCEA 407 thale cress
Q8S8E8        97 FVTFTlaPVDGRHCrLRLPMQFt---rEN-GINkpG--KIYLVGKDGSKWLANLl-----lENNRGRMTLGDGWKSFVKA 165 thale cress
P0CAP4       193 FMTLTltHDNLIKSrRYLPLSFt---rDN-GLDkpG--MIFLLGKTGRKWEANLlr----eASGRIVL-TGKGWKEFAMA 261 thale cress
Q8S8E8       252 TLTVTitPDSLEHGrLRLPLQFm---tEN-SMNkpG--EITLLGTDGAKWMASLl------LEKKGRMSLGKGWKDFAKA 319 thale cress
Q8S8E8       582 FLTLTitPDSLKHGrLRLPLQFm---iEN-SMNkpG--EITVLGKDGAKWLVSLll----eRRGRMSLDASSGQETREAE 651 thale cress
Q8H2D1       249 FVKLTptLNSLEIGkQHLPVSFt---kGN-GLIhpG--EIILVDKDRVEWSMKLqv----dNRGGMHIFGGNDWKSFCAA 318 thale cress
Q84J39       285 FLIVKytPSRETTGqLSLPVSFt---rNN-SINktG--EVILLNQDGRKWSSYLqitglgrGAGSEWFYLRRGWREMCEA 358 thale cress
XP_009126818 289 FLTRKftPSRFKTGqLYISMFSsgvlrES-GIK--KSGEMTLLDNDGRKWPSYLhk---tgQPGGEWCYIREGWREMCEA 362
Q8VZQ9       286 FLTVTlkHYMIQSGqLRLRRSFv---rEN-GIKeaE--EIILVDKNGVEWPSYVs-----sSKQRREFYMAHGWIRFCEA 354 thale cress
1YEL_A        76 NNLEDGKYLQFIydRD-RTF--YVIIYGHN 102 thale cress
P0CAP4       408 NGVKTGESFNLEyiDE-QDTtpVFKFCSNS 436 thale cress
Q8S8E8       166 NGLKTGDTYTFKllW--EDTtpVLSLCFEE 193 thale cress
P0CAP4       262 NGLKSGELFTLEaiL--EKGtpMLSLVNTQ 289 thale cress
Q8S8E8       320 NGLKTGDSITLEpiW--EDRtpVLSIKSSS 347 thale cress
Q8S8E8       652 KNREESSSl-----WElEKRtyCPRKRDSS 676 thale cress
Q8H2D1       319 NEVGAGESLTLEliR--GGLspLFKFFSKI 346 thale cress
Q84J39       359 NGVGVNDSFKLElvW--EGAnpMFKFCSKI 386 thale cress
XP_009126818 363 NGVEVNDSFVLEliF--EDAnpIFKLHSKi 390
Q8VZQ9       355 NKLKTGETFTLEfvRG-EGTtpMLKFCSEA 383 thale cress
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