Conserved Protein Domain Family
Rab12

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cd04120: Rab12 
Rab GTPase family 12 (Rab12)
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Statistics
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PSSM-Id: 206699
Aligned: 5 rows
Threshold Bit Score: 397.076
Created: 1-Sep-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Comment:Based on sequence similarity with other Rab isoforms.
  • Comment:The active conformation of Rab is stabilized by interations between the gamma phosphate of GTP and two critically conserved residues, Thr in switch I and Gly in switch II

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #######         #     ##                         #                      
P51152         7 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 86  dog
XP_537327     89 RSPTDSGPAWQRCLAEARQYCDPGSQGAGPSGSRVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 168 dog
AAH95608      36 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRGAKGIVLVY 115 zebrafish
XP_003205022  61 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 140 turkey
AAI35229      73 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 152 western clawed ...
Feature 1                                        ## #                           ###              
P51152        87 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAHEITGMRFCEASAKDNFNVDEIFLKLVD 166 dog
XP_537327    169 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 248 dog
AAH95608     116 DITKQETFEDLPKWMKMIDKYASEDAELLLVGNKLDCESDRAISRQQAERFASRISGMRFCEASAKDNFNVDEIFLKLVD 195 zebrafish
XP_003205022 141 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCEVDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 220 turkey
AAI35229     153 DITKKETFEDLPKWMKMIDKYASEEAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 232 western clawed ...
Feature 1                                                  
P51152       167 DILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRphVRCC 208 dog
XP_537327    249 DILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRphVRCC 290 dog
AAH95608     196 DILSKMPLEVPSKELSNSVLSLQPEPEIPPELPPPR--MRCC 235 zebrafish
XP_003205022 221 DILKKMPLDVIRNELSNSILSLQPEPEIPPELPPPRphVRCC 262 turkey
AAI35229     233 DILKKMPLDLVRSELSNSILSLQPEPEVPPELPPPRppLRCC 274 western clawed frog

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