Conserved Protein Domain Family
YvrC

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cd01143: YvrC 
Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Statistics
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PSSM-Id: 238563
Aligned: 23 rows
Threshold Bit Score: 171.307
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative binding site residues
Evidence:
  • Comment:based on sequence similarity to PsaA from Streptococcus pneumoniae
  • Citation:PMID 9862808

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                   #                                   
NP_393925     2 GRYSRIVSLSPAVTEILYMIGeSDNIAGNSAFC-------VHPEEARKk-kKVGSYGTVSWDILSKiDPDAVFLISGYph 73  Thermoplasma aci...
NP_781446    74 KEPSKVISLGPNVTETIFSLNkGDKLIGRTEYC-------DFPKEVEKi-nTIGTLQNPNIEKIVElKPDIVIASTHAkk 145 Clostridium teta...
NP_296307    85 AEPQRLISVLPSTSETLCAIGaCNKLVGVDDYS-------DFPAQVAKl-pKVGGLYDPNVEKIVSlKPDLVIVSKYGkl 156 Deinococcus radi...
NP_051550   101 SEPRRVVAMLPSHTETLVALGaADKLVAVDTYS-------NFPRRVVEklpRVGSAFKPDLEAIVAlKPDLILADESSgs 173 Deinococcus radi...
NP_393649    51 HPLTRIVSLLPSITVNLYALGaEKDLVGISTYT-------TYPKNLSVp--IVGELDTVNYEELLNvSPQAVITIPSYyp 121 Thermoplasma aci...
ZP_00000258  49 IHINKIVSLSPAATGTLYALGvSSDIIAVGPCT-------HFPYNVTEnlqKVTCYPDFSAQQIINlKPDAVISSSSYka 121 Ferroplasma acid...
NP_148097    36 ETPRRIVSLSPAITETLYMLGlEDRIAGVSVYD-------HKPPKAREk-pKVGSYYKVNMKLLEQlNPDLILVTTGAqr 107 Aeropyrum pernix
NP_342016    38 NNNLRIVSLAPSDTQILISLGlGKYIVGTDYYSyqllqslNLTKDIPSnitVFSQISPPNISGLLLlHPTVIVVEKGLig 117 Sulfolobus solfa...
NP_282745    16 NAKERLVVLDPASIETLFMLKaEDQIVGIATLQhs----nIYPKDQTSkltSVGTFSNPSLEKIVAlKPSLVILSSYSln 91  Campylobacter je...
NP_815350    54 KEATKIISLVPSTTEVIEDLGkTDQLIAVDTQS-------STMMTDLKk-lPQMDMMAVDAEKLIAlKPQIVYVNDINla 125 Enterococcus fae...
Feature 1                                                                                       
NP_393925    74 a---lyEKLSEKYH--VVEFElps--tvaGILDLVMKVGFEVDs-lDASRDLYHKLLRSIPEATNdv-------mTGYIE 138 Thermoplasma aci...
NP_781446   146 e---nlDKLNQLGIk-TIALYgee--dfeGAYDVISSIGKVLNannESNTIVNNMKKKVNFVKEKvkgk---dtpSVYYV 216 Clostridium teta...
NP_296307   157 -----tEQLEQLGVptVAVNPet----yaDVFSKTTLLGKIVNreaQAKALNISMQREIARVEILtkna--arkpLTYFE 225 Deinococcus radi...
NP_051550   174 k---ltSKLAALGL--TVYGGtaq--synEVFEKMAVIGKMVNretNATRLITTTRADLNALQQSvrql---pkiSVYYE 243 Deinococcus radi...
NP_393649   122 q--nviTKILDMGIp-VIEVGqdn---ftQIEQQILELGNITGtqnNATEIVHWMQTSLTYLHQNatrlsdgkrmSIFYL 195 Thermoplasma aci...
ZP_00000258 122 t---evQELLDAGIn-YIYLDsgsgstfhLIEKQDTLLGKLTGtmsNASKLNSWMNTSLNDFKDTglt----nksVFYAL 193 Ferroplasma acid...
NP_148097   108 r---ilEDLSRRYP--VYPIPlpv--svsGIIDQAVQVGIVTGaleEASRLETELLDKASKLRGAgr------glRIYYE 174 Aeropyrum pernix
NP_342016   118 s---yiEQMKEAGLn-VLITNndfastysQIENCILKVGEYFNvtsKAQQLIDWMNQKISDFSTAgn------vsVAYLL 187 Sulfolobus solfa...
NP_282745    92 ----leEGLKNFGIk-SINLKaer---leDITKNITTLGQITKkekEAELLKQEFNQKFKKLSDKpln-----ksAIYLY 158 Campylobacter je...
NP_815350   126 ssesvwKQVEDAGIt-VVNIPtst--sikAIKEDVQFIADSLSeheKGQKLIKTMDQEIDEVAKIgkti--kkpkTVLFE 200 Enterococcus fae...
Feature 1                                                                
NP_393925   139 LDLggpvsfGSYSYITDALslMRIQSIYQRERR---EWLQPDFGYv-kSMDPDIIIF 191 Thermoplasma acidophilum
NP_781446   217 IGFgkg-gdFTPGKDTFLHklITLAGAKNAGEDa-vNWKYSLEKLi--EKNPDIIIC 269 Clostridium tetani E88
NP_296307   226 IDPt----pYSIGPNSFMGvlLTKAGARNVIPAslgDFPKIDPELi-vKQNPQLILG 277 Deinococcus radiodurans R1
NP_051550   244 VDPa----pYSVGPNSFIGtlIAKAGGQTIIPAklgDFPKIDPELi-vKANPQVIIG 295 Deinococcus radiodurans R1
NP_393649   196 LSTeg--gyWTAGNQTFINdfFNIADLRNIANEt--GYYTVPGSVi-lNDSPDIILL 247 Thermoplasma acidophilum
ZP_00000258 194 CIEnh--apWTSGNNTFINsmFNYAHLKNVMTDs--GFFQASTQVv-aNDSPQVLLL 245 Ferroplasma acidarmanus
NP_148097   175 VYLgg---pVTAGAHTYISdaFRIAGVETPFMSertTWIYQPPPErinRFKPQFILY 228 Aeropyrum pernix
NP_342016   188 WICpdl-sfYTAGGNVFINsiIVQAGGINVFANy-sGYPLLTPSPl-lIIKPSVVIA 241 Sulfolobus solfataricus
NP_282745   159 SSNp----lMAFNDNSLIAdiLRLIGIKNLSPQsqiSRPVISAEYi-lKQNPDILIL 210 Campylobacter jejuni subsp. jejuni NCTC...
NP_815350   201 VAAlp--diYSFGNGTFLNemIETIGAKNVLANe-kGWLPVTEEAa-iAAKPEVILT 253 Enterococcus faecalis V583

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