Conserved Protein Domain Family
TCP
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pfam03634: TCP (this model, PSSM-Id:397614 is obsolete and has been replaced by 460998)
TCP family transcription factor
This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.
Links
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Statistics
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PSSM-Id: 397614
Aligned: 45 rows
Threshold Bit Score: 129.004
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q67WL3        57 TSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGtgtiPANFTSLNISLRSS-GS 135 Japanese rice
XP_010320553  88 TTTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGtgtiPANYSSLNISLRSSrHH 167 tomato
XP_006363220  83 TTTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGtgtiPANYSSLNISLRSSrHH 162 potato
EFH52114     109 ASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGtgtiPANFTSLNISLRSS-GS 187 Arabidopsis lyr...
Q93Z00       115 ASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGtgtiPANFTSLNISLRSS-GS 193 thale cress
Q53PH2       150 RPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGtgtiPANFSSLAVSLRSAaSH 229 Japanese rice
RID44879      53 RSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGtgtiPANFSSLSVSLRSS-GS 131 field mustard
XP_004965036  62 TSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGtgtiPANFTSLNISLRSS-GS 140 foxtail millet
BAK00816      57 TTSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGtgtiPANFTSLNISLRSS-GS 135 domesticated ba...
ADM87266      94 TSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGtgtiPANFTSLNISLRSS-GS 172 tomato

Q67WL3       136 SLSipshlrlaglagprfgg------garaadawdrvvglgfgGAADAPssatsss------ssplllSFHSG------- 196 Japanese rice
XP_010320553 168 SASnylahnhnnfghv------------------------------------------yhdrnyfngvglFSSennsffp 205 tomato
XP_006363220 163 SASnylahnninnfgh-----------------------------------------vyhdrnyfngvglFSSennsffp 201 potato
EFH52114     188 SMSlpshfrsaastfspnnmfs---pamlqqqqqrggggfhhpHLQGRAttsslfpgidnftpttsflNFHNP------- 257 Arabidopsis lyr...
Q93Z00       194 SMSlpshfrsaastfspnnifspamlqqqqqqqrgggvgfhhpHLQGRAptsslfpgidnftpttsflNFHNP------- 266 thale cress
Q53PH2       230 SSSpraapfhhlqqq-------------------------------------------qqhdvaamlgfhHHHhqllppp 266 Japanese rice
RID44879     132 TLSappsksvplygalglthh------------------------------qyeeqggafgahtppllGFHHHlqqhqq- 180 field mustard
XP_004965036 141 SFSipahlrapglpgtrfg---------gargdpwdrvvglgfgGAEGPpsatssa------ssplllSFHSG------- 198 foxtail millet
BAK00816     136 MLStipahlraaglpgsrfg------ggpradawdrfvglgfgGGLESPastttss------ssplllSFHSG------- 196 domesticated ba...
ADM87266     173 SMSvpsqlrssyfnpnfslsqrr--------------------------slfqgiglssdrsatttllNFQTGnsnlhqf 226 tomato

Q67WL3       197 -------SVGLDV-SPPSASTSPAAADLSRKRRWEQEMQQQQQYQ 233 Japanese rice
XP_010320553 206 sgnlnmlQAKEELcDDHDDNDNDNDNNTGRIKRRSEDQDLLQNNY 250 tomato
XP_006363220 202 sgnlnmlQAKEELcDD-DDDDNDNNNNTGRIKRRSEDQDLLQNNY 245 potato
EFH52114     258 -----------------------------TKQEGDQDSEELNSEK 273 Arabidopsis lyrata subsp. lyrata
Q93Z00       267 -----------------------------TKQEGDQDSEELNSEK 282 thale cress
Q53PH2       267 pphqhpePTPQD----------PGAGEFMRKRYREADDLFKDTSR 301 Japanese rice
RID44879     181 --qqhhqQAPAETiPG------PDGESFSRKRYRSVDSSKEDGEG 217 field mustard
XP_004965036 199 -------SVGLDV--SPSSSSAAASSDLSRKRRWEQEMQQQQQQQ 234 foxtail millet
BAK00816     197 -------SVGLDV--SPSSSAAAASTELSRKRRWEQEMQQQQQQh 232 domesticated barley
ADM87266     227 qakqemrDNSLDL------TETSIEESLSRKRRQDLDLQQEQQQN 265 tomato
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