Conserved Protein Domain Family
FimA

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COG3539: FimA (this model, PSSM-Id:226069 is obsolete and has been replaced by 442760)
Pilin (type 1 fimbria component protein) [Cell motility]
Statistics
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PSSM-Id: 226069
Aligned: 134 rows
Threshold Bit Score: 51.3769
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
549482   178 DYDKFWAIGGIVHnitvEFYTDTNFDPTlnqqvqlssssnylysFKAYSPGTkVVDHSnHiyvnftlnnvKLTLPTcfts 257 Escherichia coli
15832472   1 --------------mkrISLLMLWSfsf-------------malSNVSFHGYlVQPPN-C----------SISNGQn--- 39  Escherichia coli O1...
15832473   1 -------MKGAYSawawLLLCSIVSTPVmag----------sksVAMVLRVLvDAPPP-C----------TVTGAS---- 48  Escherichia coli O1...
15833280   1 ------------------MIWQPEFTDKtlsr------------ktgAVQG------------------------Dv--- 23  Escherichia coli O1...
16763589   1 --------------mkkIVLTMLMGG-Slaa----------qaaDNLKFHGTlISPPN-C----------TINNDQt--- 41  Salmonella typhimur...
15802881   1 --------------mkrISLLMLWSfsf-------------malSNVSFHGYlVQPPN-C----------SISNGQn--- 39  Escherichia coli O1...
15802882  25 ARDRSNSMKGAYSawawLLLCSIVSTPVmag----------sksVAMVLRVLvDAPPP-C----------TVTGAS---- 79  Escherichia coli O1...
15803687   1 ------------MlpseTMIWQPEFTDKtlsr------------ktgAVQG------------------------Dv--- 29  Escherichia coli O1...
20140534   1 --------------mrkTFLTLLCVSSAiah----------aadEDITFHGTlLSPPT-C----------SISGGKt--- 42  Escherichia coli
20140535   1 --MTGGVMSQKFVvgagLLVCSVCSLSAmag----------skpVDLILRVLvDAPPP-C----------SIKGSQ---- 53  Escherichia coli
549482   258 iltgPSVNGSTVRMGEYSSGTIKngaSPVPFDISLQNCIRVRNi-ETKLVTGKVGTQNTQLlgNTLTGSTAAkgvGVLIE 336 Escherichia coli
15832472  40 ----IELTFRDVNIDDINGSNye--qVVP----YTITCDTAVRdpQMEMTLTWSGTQSDFD--DSAVATDLN---GLGIH 104 Escherichia coli O1...
15832473  49 ------VEFGNVFISKIDGVSyk--rPID----YSLVCNNLAMd-DLRLNMQAT-TTVING--ETVIDTGIA---GFGIR 109 Escherichia coli O1...
15833280  24 ----IKVNFGFINGQKFTTRNAMpdgFTPVDFDITYDCG-DTSkikNSLQMRIDGTTGVVD--QYNLVARRR---SSDNA 93  Escherichia coli O1...
16763589  42 ----IDVKFGNLLINKIDGTRya--qNVP----YEITCDSTVRdeTMAMTLTLSGSVSDFN--PAAVNTSVA---GLGIE 106 Salmonella typhimur...
15802881  40 ----IELTFRDVNIDDINGSNye--qVVP----YTITCDTAVRdpQMEMTLTWSGTQSDFD--DSAVATDLN---GLGIH 104 Escherichia coli O1...
15802882  80 ------VEFGNVFISKIDGVSyk--rPID----YSLVCNNLAMd-DLRLNMQAT-TTVING--ETVIDTGIA---GFGIR 140 Escherichia coli O1...
15803687  30 ----IKVNFGFINGQKFTTRNAMpdgFTPVDFDITYDCG-DTSkikNSLQMRIDGTTGVVD--QYNLVARRR---SSDNA 99  Escherichia coli O1...
20140534  43 ----IEVEFRDLIIDDINGNYgr--kEVP----YELTCDSTTRhpDWEMTLTWTGTQTSFN--DAAIETDVP---GFGIE 107 Escherichia coli
20140535  54 ------VEFGNMIADNVDGTNyr--qDAK----YTLNCTNSLAn-DLRMQLKGN-TSTING--ETVLSTNIT---GLGIR 114 Escherichia coli
549482   337 GLATSKNPLMTLKPNdtnsvyidyETEDDTSDGVYPNQgNGTSQPLHFQATlkqdGNIAIepGEFKATSTFQVTYP 412 Escherichia coli
15832472 105 LKQAGSDFKLH---------------TPLVVNE---TS----LPVLTAVPVkksgVDLPE--SDFEAWATLQVDYQ 156 Escherichia coli O157:H7
15832473 110 IQKVSDHSILDLTPG---------AWLPFNFSSG--------ALALEAVPVvqsgVSLTA--AEFSASATIVVDYQ 166 Escherichia coli O157:H7
15833280  94 PDVGIRIENLGGGVA---------NIPFQNGILPVDPS-GHGTVNMRAWPVnlvgGELET--GKFQGTATITVIVR 157 Escherichia coli O157:H7
16763589 107 LRQNDQPFTLG---------------STITVNE---QS----IPVLKAIPVkksgASLKE--GGFDATATLQVDYQ 158 Salmonella typhimurium LT2
15802881 105 LKQAGSDFKLH---------------TPLVVNE---TS----LPVLTAVPVkksgVDLPE--SDFEAWATLQVDYQ 156 Escherichia coli O157:H...
15802882 141 IQKVSDHSILDLTPG---------AWLPFNFSSG--------ALALEAVPVvqsgVSLTA--AEFSASATIVVDYQ 197 Escherichia coli O157:H...
15803687 100 PDVGIRIENLGGGVA---------NIPFQNGILPVDPS-GHGTVNMRAWPVnlvgGELET--GKFQGTATITVIVR 163 Escherichia coli O157:H...
20140534 108 LQHDGQRFKLN---------------TPLAINATDFTQ----KPKLEAVPVkasdAVLSD--TNFSAYATLRVDYQ 162 Escherichia coli
20140535 115 IENSADNSLFAVGEN---------SWTPFNINN---------QPQLKAVPVkasgAQLAA--GEFNASLTMVVDYQ 170 Escherichia coli
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