2VHA


Conserved Protein Domain Family
PBP2_GltI_DEBP

?
cd13688: PBP2_GltI_DEBP 
Click on image for an interactive view with Cn3D
Substrate-binding domain of ABC aspartate-glutamate transporter; the type 2 periplasmic binding protein fold
This subfamily represents the periplasmic-binding protein component of ABC transporter specific for carboxylic amino acids, including GtlI from Escherichia coli. The aspartate-glutamate binding domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
?
PSSM-Id: 270406
Aligned: 31 rows
Threshold Bit Score: 192.468
Created: 5-Jun-2009
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
ligand bindingputative dimer
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:2VHA; Shigella flexneri glutamate/aspartate-binding protein in complex with glutamate, contacts at 4 A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                      #  #                                                    #         
2VHA_A        10 LDKIAKNGVIVVGHReSSVPFSYYDnqQKVVGYSQDYSNAIVEavkk----klnKPDLQVKLIPIT-SQNRIPLLQNGTF 84  Shigella flexneri
NP_440034     27 LDRIEQTGVINAGTRkDAVPFAYVDdqGEWVGFSIDLLELIRQeae-----arlGKPIKLNMVEAT-ADNRFDLITNQTI 100 Synechocystis s...
YP_001188740  25 LERIREEGQFVLGFVpGNLPFSDGDa-AQASGYSIDLCRHVASlvkq----qlaLPELPVRYRPLT-PLDMLDAVTDGKV 98  Pseudomonas men...
ACE89115      33 LDRVRTSSALKLGYDpDARPFSFDAq-GKPDGYAVALCNRIADslra----qlnLSKLDVEWVPLS-GDAKLRAIQDGTA 106 Rhizobium etli ...
NP_488170     28 MQKVSRTGVLTAGTSkDAMPFAYTNaqGQLTGYSVDMLSEIKRhle-----kelGKKIQLKLVPLT-PAQRIPKIVNRQV 101 Nostoc sp. PCC ...
CAO88377      26 LEKIKRTGLLEVAMReDAIPFGYRDsnNNLQGLCLDFIQLLREelkh----klnLQIISVKIYKST-LFNRFQLLENKTV 100 Microcystis aer...
CBN53962      28 LQDIRQNGVLKVGIRkDAAPFGYTEg-DNWKGLCVEGMEIFRAslekqlnrsvrLEKLETVLDESS-PQGRYRSITSKRA 105 Oscillatoria sp...
BAA17688     111 MEKIIRTGNLTIGANlDNVPFSYINdnNEVVGYSIDIADRIREevg-----kelGRDVVLQIVEVQdMSDALPKLKTGEL 185 Synechocystis s...
YP_376611     26 AGPFAKRTSLKAVIFeDVKPLYQKSg-DTYEGFGVDMLNLIKDq---------aGRRTLKFIPTTS-AEDGMKAITSGKA 94  Synechococcus s...
YP_723972     30 QETIIRRELIVVGVRgDSPWFGFRNd-GKWTGYCIDIAYALADrls-----anqLDPIRVRLVTST-TQSRWDLVTSGRV 102 Trichodesmium e...
Feature 1             #      #                                                                 ##
2VHA_A        85 DFECGSTtNNVERQKq--AAFSDTIFVVGTRLLTKkg--gdIKDFa--------------------DLKGKAVVVTsGTT 140 Shigella flexneri
NP_440034    101 DLECASStFTWNRTAv--VDFSVSYFADGTKIITGvd--sdLESAd--------------------SLAGRAIGVIpDTT 156 Synechocystis s...
YP_001188740  99 DILCAPVvESLERRRr--VSFSLPIFTAGLGILVRqdapasLMLPlkgepahsg---ptwratinrGLNRHRFAVLkGTV 173 Pseudomonas men...
ACE89115     107 DLVCAAEpVTLGRRQq--VSFSLPIFPSGTGALLNas--apLALRevlqygepssrpvwrgapartILEHKTFSSIaGTT 182 Rhizobium etli ...
NP_488170    102 DIVCDASsFTWERDKk--VDFSVSYGATGTQLLVKsg--snLGSPe--------------------SLIGKRIGVLaQTT 157 Nostoc sp. PCC ...
CAO88377     101 DFECGPNsIRKNIPDg--VSFSRPFFVTGTQFLVRsdnqnnFNFSs--------------------SLEGISIGVLrDTT 158 Microcystis aer...
CBN53962     106 HLECGPNtINKNSPTg--IAFSLPFLYSGTYLMVKpe--nrLRVNps------------------gFLQDLTIGVLgDSL 163 Oscillatoria sp...
BAA17688     186 DIVCDTA-FTWERDRy--VDFTVSYAVAGIQLLVPnd--tpINSRe--------------------TLMGRRVAMVpNTI 240 Synechocystis s...
YP_376611     95 DIACGVA-FDWGRAEk--VSYTIPFAIGGTRLLTKt----tINGTp-------------------sSLRGRTVGVVkDSS 148 Synechococcus s...
YP_723972    103 DLECGPNsISAEREAkhgINFSSPFFITATQILAKkg--rqEEDV---------------------KVGNATVGVVrNTT 159 Trichodesmium e...
Feature 1                                                ##                                   #  
2VHA_A       141 SEVLLNKLneeqkmnmRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKak--kpDNWDIVGKp-----qSQEAYGC 213 Shigella flexneri
NP_440034    157 NAKAILDFqp----gaTIVEVKDQADGMAKLEAGEIEAFAGDGIVLAGLKKTsd--npQQWKVVPNfp----yQYEAYAC 226 Synechocystis s...
YP_001188740 174 SVDWARTRirqlglqsELVEVDSNREGVEQVVTRQVDAFFADSLVLLNYQAQhp--qgAQLWVPERl-----fAVESVAM 246 Pseudomonas men...
ACE89115     183 SEDWLSDKiktfqlaaTATPVTDYQQGIARVLDGSSAVLFGDMPLLMDAAARsd--ssGNLIVLERh-----fTYEPLGL 255 Rhizobium etli ...
NP_488170    158 NEQAIKRVqp----qaKLVYLKSRSEGYTALQEGKIDAFSSDSILLEGWLQRve--npDDFAIVPDrp----ySREGIAC 227 Nostoc sp. PCC ...
CAO88377     159 TQELLRQKypla-tyqEFQGVTGRLRGIQSLRRNRIDAFASDGILLIGEAVIlglsleQDYQLIPRnp----lNCDYYGF 233 Microcystis aer...
CBN53962     164 TQQFIAGRyqla-nqkVYQGQSGRQTAVKDAVEGKIDALASDGILLVGEALRqgl-npNQYALIPEkp----lTCIAYGM 237 Oscillatoria sp...
BAA17688     241 VEDAVKIVqn----eiEVVPVTSVRAGMEALKKGTVDAVAGDGIQLAGLRQVld---mPDTKVIPQpa----eTRYGVGC 309 Synechocystis s...
YP_376611    149 SAKILETVvp----saSLQAYATPAEAFAAYDSGKISTLAGGTLWLAANSDAk-----NSDLVPIRp-----yGRTGIGC 214 Synechococcus s...
YP_723972    160 NESDLKSAypl---ekIDNKYLSREEGVQAVMDGEVSGFASDGTLLLGSAEMmnldieNDYTFITInqengrpFCAGYGF 236 Trichodesmium e...
Feature 1                                                 
2VHA_A       214 MLRKDDp--QFKKLMDDTIAQVqt-----sGEAEKWFDKWF 247 Shigella flexneri
NP_440034    227 LLPKDDs--DWRNLVNYSLVKYmegvisdqTAAVEIYERWF 265 Synechocystis sp. PCC 6803
YP_001188740 247 PLARDDe--DFRLLVDTALSRLnr-----sEEGEALYRSYF 280 Pseudomonas mendocina ymp
ACE89115     256 ELTRGDe--DFRLAVDRALSQAya-----aQDFRAFFTTWF 289 Rhizobium etli CIAT 652
NP_488170    228 MVPEDNs--KFLDAVNYSLVKFmqgfvngdTRYVTIFDRWF 266 Nostoc sp. PCC 7120
CAO88377     234 ILPANDl--QWQEFINGVIVTSen-----rNIFKKWFTEVA 267 Microcystis aeruginosa PCC 7806
CBN53962     238 IVPANDs--EWKEIVNNFIRNNss-----qTLLERSFGANS 271 Oscillatoria sp. PCC 6506
BAA17688     310 MVREDNp--GFLRLANRALVRLaegyvqgdPEDVAIVDKWI 348 Synechocystis sp. PCC 6803
YP_376611    215 IVKQNNg--KLLAAANNAIGQTmqeyvngnAATREMVNRWI 253 Synechococcus sp. CC9902
YP_723972    237 ILPGGEdnsSWQRYINDFLAHNkk----aqRIRKKWLGNLS 273 Trichodesmium erythraeum IMS101

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap