1ZY9,4FNU,2XN2,2YFN,3MI6


Conserved Protein Domain Family
GH36

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cd14791: GH36 
Click on image for an interactive view with Cn3D
glycosyl hydrolase family 36 (GH36)
GH36 enzymes occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-galactosidase, alpha-N-acetylgalactosaminidase, stachyose synthase, and raffinose synthase. All GH36 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. GH36 members are retaining enzymes that cleave their substrates via an acid/base-catalyzed, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate. Two aspartic acid residues have been identified as the catalytic nucleophile and the acid/base, respectively.
Statistics
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PSSM-Id: 269892
Aligned: 270 rows
Threshold Bit Score: 146.6
Created: 24-Sep-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitecatalytic site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:4FNU; Geobacillus alpha-galactosidases AgaA with bound stachyose; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #                                #                                      
1ZY9_A       194 HTPTGWCSWYHYfld--ltWEETLKNLKLAKnFPFEVFQIDDAYEKd----------iGDWLVTr-gDFPs-VEEXAKVI 259 Thermotoga mari...
4FNU_A       328 ERPILINNWEATyfd--fnEEKIVNIARTEAeLGIELVVLDDGWFGerddd---rrslGDWIVNr-rKLPngLDGLAKQV 401 Geobacillus ste...
YP_001275710 286 YPWVQYNSWRYEqn---inEEQQLAAIDRCAeLGIELAVMDLGWARm----------iGDWRPDp-vKFPrgLRPLVERA 351 Roseiflexus sp....
YP_828588    300 AKSFPYVSWDSWafqdkidEQTLRRNADLAAaIGVQLFIVDLGWANg----------iGDWHADp-aKFPngLGALADYV 368 Solibacter usit...
YP_003324226 299 FPYVIFNTWGYAwd---ltPDVTLHCLEVATeVGAEVFVADYGWARd----------vGDWMSVp--ARMpkLEELGRRV 363 Thermobaculum t...
WP_018974089 300 YPWTTNNSWGSAma---isDAQARRMIDDAAtLGLEMFHLDAGWFRa----------vGDWHPDa-kKFPhgLAPLADHT 365 Rudaea cellulos...
WP_020717266 295 YPLLVNNSWGSGmq---vdETLARRMIRDSAeLGLEMFHIDAGWFRg----------vGDWYPDp-kKFPhgLAAVADDA 360 Acidobacteriace...
YP_004464911 220 DVPLEYNEWWPYedk-yitEDIYLENAKIAKeLGCRYAVMDAGWFGsengqg-wyekrGDWDVInkeRFPsgMKALCDNA 297 Mahella austral...
YP_001275706 267 RLPVEWNHWWAYedr-aldEATFRANVDVAArMGIEVCTLDAGWFGasdagthwydqrGDWEMVnavRFPsgIRALADDV 345 Roseiflexus sp....
WP_020575389 272 RLPVEWNHWWTYedh-ridEATFKANADIAAeLGVEVCTLDAGWFGpddstshwpevrGDWDLVnaaRFPggIRALADYV 350 Actinopolymorph...
Feature 1                 #                                                                      
1ZY9_A       260 AEnGFIPGIWTAPFSVSETSDVFNEHPDWvvkengepk---xayrnwnkkIYALDLskDEVLNWLFDLFSSLRKx-GYRY 335 Thermotoga mari...
4FNU_A       402 NElGLQFGLWVEPEMVSPNSELYRKHPDWclhvpnr-------prsegrnQLVLDYsrEDVCDYIIETISNVLAsaPITY 474 Geobacillus ste...
YP_001275710 352 HAyGMRFGVHVALAQCNPDAPVAREHPDWlihtg-----------ndyygAGPLCLghEPCRAWLIEQLIRLIDeeGIDY 420 Roseiflexus sp....
YP_828588    369 HSlGMKFGLHFALAEAAANSPVLQANPDWtatdd-----------ssyfgAAPLCLsnKPTQDWLIQEGIRVIDeyHVDW 437 Solibacter usit...
YP_003324226 364 HAhGMLFGAWMAFANASPRSQVLLEHPEWaawpdd----------wgsfgTRALCLaePRVREWVTQQVLRVVReyELDY 433 Thermobaculum t...
WP_018974089 366 HArGLKFGLWVDWVQAGISKEKGALDVADpairdwlttdpppgwkpeefkGLTIDIgvPAAKAWVAKEVNRLVReyKLDM 445 Rudaea cellulos...
WP_020717266 361 HRhGLRFGIWVDWTQAGLDTQPGALNVHDpkvrdwlvsdlppdwkpepfkGQTIDLgvPAAQAYAQREVNRLVHdyHLDM 440 Acidobacteriace...
YP_004464911 298 KKiGILPGIWCEIEAVGQGAELNHTHDNIiakrd-----------gkslgYVCLGS--EEGKAWAMSVVDKILGeyGAKW 364 Mahella austral...
YP_001275706 346 HArGMRFGIWCEIEGLGVRARLAETHPDFvamrh-----------gsrigYVCLGN--PAAQQWAFETLDHLIRdyGCDW 412 Roseiflexus sp....
WP_020575389 351 HErGMRFGLWCEIEALGPKAALLTRRPDFpalrd------------gaplGYVCLAn-PAAWQWAYETLDRLSRelGADW 417 Actinopolymorph...
Feature 1         #   #                                                                   #      
1ZY9_A       336 FKIDFLFagavpge-----------------------------rkknitpIQAFRKGIETIRKAVgedSFILGCGs---- 382 Thermotoga mari...
4FNU_A       475 VKWAMNRhmteigssalp---------------------perqretahryMLGLYRVMDEITSRFp-hILFESCSggggr 532 Geobacillus ste...
YP_001275710 421 IIQDGEDmvkrcersdht---------------------hapgdsnyansQYGLDIVIESLRRARp-hLVLENCEdgg-c 477 Roseiflexus sp....
YP_828588    438 ILQDGQNmvkqctkssht---------------------hdpndsnyanaVQGINAVVGAIQQARp-nVLWENCEngg-n 494 Solibacter usit...
YP_003324226 434 LVHDFELitpcrhpahs-----------------------hppdpsgyhsAQGYNQVLRDLRHAHp-qLVVENCQggg-r 488 Thermobaculum t...
WP_018974089 446 LEHDGYVvaqgcdradhehatcdpkrvkkysddgfiwmdgpnstdvsyhaARAYYDIHDGLRRDHp-dLLLEVCNdggrm 524 Rudaea cellulos...
WP_020717266 441 LEHDGYLvaqgcvrrdhphappdpsrms--iaagnhivestnstdvsyhaVNAYYAIYSNLRRDHp-nLLLEICNdggrm 517 Acidobacteriace...
YP_004464911 365 IKFDFNLdpapgcnasnh---------------------ghgegdglyahYIGYYHLMDDIHKKYp-dVVIENCSsgglr 422 Mahella austral...
YP_001275706 413 IKLDFNLdpgagcnrtdh---------------------ghgardglyahYRGYYALLDRVRSVHp-dVVLENCSsgglr 470 Roseiflexus sp....
WP_020575389 418 IKLDFNLdpglgcnrtdh---------------------ghgvgdglfehYLGYYRLLDRVREEHp-dLVLENCSsgglr 475 Actinopolymorph...
Feature 1                    #   #                                                               
1ZY9_A       383 pLLPAVGCvdGXRIgPDTApfwgehiedngapaARWALRNAITRYFxhdrfwLNDPDClilreek------tdltqkeKE 456 Thermotoga mari...
4FNU_A       533 fDPGMLYYmpQTWT-SDNTd-------------AVSRLKIQYGTSLvyp-isAMGAHVsavpnhq-------vgrvasLK 590 Geobacillus ste...
YP_001275710 478 mMTYKMARlyHTSItVDNTs-------------SYATRQGVYGASYpfs-prYSVRYMqd----------------dpSR 527 Roseiflexus sp....
YP_828588    495 mMTFNMVKsyVTSItNDASg-------------SLPSRQAVYGATYpfp-prYAERYMpqs--------------dglST 546 Solibacter usit...
YP_003324226 489 iMTYAMTKlhDTSItTDGAal----------ldSLGRRRALYGASYpfp-prYCASYMqe----------------hpTD 541 Thermobaculum t...
WP_018974089 525 vDFGSAAHadYFSI-VDSYd-------------PVSNRQAFYDASHvlp-paMLETYVkewpa----------krienFR 579 Rudaea cellulos...
WP_020717266 518 vDFGSAAHgdYFSI-TDTYd-------------PLSNRRAFYDASHllp-saMLESYVekwpt----------pkienFR 572 Acidobacteriace...
YP_004464911 423 hDIEMLSHthWGHL-SDPDy-------------TEFHLQVFWGALSylh-qsACLHFSwsevlqdhnl-gilnpisedME 486 Mahella austral...
YP_001275706 471 iDPGIARRthMAFL-SDPDw-------------PEHSLQVFWGATQmla-pdACLHWSycewsfarhpsqtfnprdpsLQ 535 Roseiflexus sp....
WP_020575389 476 vDLGILRHthLTFL-SDPDw-------------PEHGLQLLWGATTmlp-pnQLLHWGfsewlsthpq-qtfdprdiqLA 539 Actinopolymorph...
Feature 1                                                    
1ZY9_A       457 LYSYTCGvlDNXIIESDDLslv---------rdHGKKVLKETLE 491 Thermotoga maritima
4FNU_A       591 TRGHVAM--SGNFGYELDItklte-----tekqMMKQQVAFYKD 627 Geobacillus stearothermophilus
YP_001275710 528 YTLRSSIf-GGPLILMQRVtewne-----aqmaETRQAIEQYKA 565 Roseiflexus sp. RS-1
YP_828588    547 YATHSYRf-GGPWVLMFPLtaltn-----dqagFLKTQIQLYKD 584 Solibacter usitatus Ellin6076
YP_003324226 542 YACRSCMl-GGPWILMDRAadwgp-----leieIARRNIALYKR 579 Thermobaculum terrenum ATCC BAA-798
WP_018974089 580 YMLRSGM--MGWFTLMLDTttwsk-----qqhgIARAELDFYKT 616 Rudaea cellulosilytica
WP_020717266 573 YMLRSGM--MGWLTIMLDTtawnq-----qqhaAAKAEIKLYKD 609 Acidobacteriaceae bacterium KBS 96
YP_004464911 487 PYKFDYY--IRAVLMGIPGfsyrlpempewckrRLKELAGFYED 528 Mahella australiensis 50-1 BON
YP_001275706 536 PHQVDFY--TRISMLRRFGfsqrlpdlpdwvaqRYADHIAFYKA 577 Roseiflexus sp. RS-1
WP_020575389 540 PHQLDYY--RRIAMLGATGfslglpelqawvrdRLAAQIRTYQQ 581 Actinopolymorpha alba

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